Protein–RNA interactions for Protein: P39956

RPH1, DNA damage-responsive transcriptional repressor RPH1, yeastyeast

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPH1P39956 YMR272W-AYMR272W-A 114 nt0.66□□□□□ -2.3
RPH1P39956 YPR159C-AYPR159C-A 102 nt0.65□□□□□ -2.31
RPH1P39956 YBR099CYBR099C 384 nt0.63□□□□□ -2.31
RPH1P39956 PAU12YGR294W 363 nt0.62□□□□□ -2.31
RPH1P39956 CSE1YGL238W 2883 nt0.61□□□□□ -2.31
RPH1P39956 PET111YMR257C 2403 nt0.61□□□□□ -2.31
RPH1P39956 NIP1YMR309C 2439 nt0.6□□□□□ -2.31
RPH1P39956 LTE1YAL024C 4308 nt0.6□□□□□ -2.31
RPH1P39956 RPM2YML091C 3609 nt0.6□□□□□ -2.31
RPH1P39956 YNL205CYNL205C 423 nt0.59□□□□□ -2.31
RPH1P39956 BUL2YML111W 2763 nt0.59□□□□□ -2.32
RPH1P39956 RPS26AYGL189C 360 nt0.58□□□□□ -2.32
RPH1P39956 YDR371C-AYDR371C-A 105 nt0.57□□□□□ -2.32
RPH1P39956 Q0143Q0143 153 nt0.57□□□□□ -2.32
RPH1P39956 BIR1YJR089W 2865 nt0.57□□□□□ -2.32
RPH1P39956 FMP27YLR454W 7887 nt0.56□□□□□ -2.32
RPH1P39956 ORC3YLL004W 1851 nt0.54□□□□□ -2.32
RPH1P39956 UTP10YJL109C 5310 nt0.52□□□□□ -2.33
RPH1P39956 YNL266WYNL266W 420 nt0.52□□□□□ -2.33
RPH1P39956 PMP2YEL017C-A 132 nt0.51□□□□□ -2.33
RPH1P39956 YKL145W-AYKL145W-A 93 nt0.51□□□□□ -2.33
RPH1P39956 YOL014WYOL014W 375 nt0.51□□□□□ -2.33
RPH1P39956 RCO1YMR075W 2055 nt0.5□□□□□ -2.33
RPH1P39956 snR85snR85 171 nt0.5□□□□□ -2.33
RPH1P39956 SBH1YER087C-B 249 nt0.5□□□□□ -2.33
RPH1P39956 YBR178WYBR178W 375 nt0.49□□□□□ -2.33
RPH1P39956 AI1Q0050 2505 nt0.48□□□□□ -2.33
RPH1P39956 SEC10YLR166C 2616 nt0.48□□□□□ -2.33
RPH1P39956 EST1YLR233C 2100 nt0.47□□□□□ -2.33
RPH1P39956 YNL103W-AYNL103W-A 90 nt0.47□□□□□ -2.33
RPH1P39956 IQG1YPL242C 4488 nt0.47□□□□□ -2.33
RPH1P39956 snR69snR69 101 nt0.46□□□□□ -2.34
RPH1P39956 MLP1YKR095W 5628 nt0.43□□□□□ -2.34
RPH1P39956 YBR196C-AYBR196C-A 150 nt0.43□□□□□ -2.34
RPH1P39956 YPL060C-AYPL060C-A 3315 nt0.43□□□□□ -2.34
RPH1P39956 YBL100W-BYBL100W-B 5313 nt0.42□□□□□ -2.34
RPH1P39956 tD(GUC)QtD(GUC)Q 75 nt0.41□□□□□ -2.34
RPH1P39956 YJL077W-AYJL077W-A 87 nt0.4□□□□□ -2.35
RPH1P39956 RDS3YPR094W 324 nt0.4□□□□□ -2.35
RPH1P39956 snR61snR61 90 nt0.39□□□□□ -2.35
RPH1P39956 YNL054W-BYNL054W-B 5250 nt0.36□□□□□ -2.35
RPH1P39956 TFB5YDR079C-A 219 nt0.36□□□□□ -2.35
RPH1P39956 tQ(UUG)QtQ(UUG)Q 76 nt0.36□□□□□ -2.35
RPH1P39956 YLR286W-AYLR286W-A 135 nt0.35□□□□□ -2.35
RPH1P39956 YGL041C-BYGL041C-B 183 nt0.34□□□□□ -2.36
RPH1P39956 YOR186C-AYOR186C-A 210 nt0.33□□□□□ -2.36
RPH1P39956 THO2YNL139C 4794 nt0.33□□□□□ -2.36
RPH1P39956 YDL159C-BYDL159C-B 177 nt0.32□□□□□ -2.36
RPH1P39956 snR81snR81 201 nt0.31□□□□□ -2.36
RPH1P39956 YOL083C-AYOL083C-A 141 nt0.31□□□□□ -2.36
RPH1P39956 YAL037C-AYAL037C-A 93 nt0.29□□□□□ -2.36
RPH1P39956 YLR299C-AYLR299C-A 93 nt0.29□□□□□ -2.36
RPH1P39956 MLP2YIL149C 5040 nt0.27□□□□□ -2.37
RPH1P39956 YBL071C-BYBL071C-B 99 nt0.26□□□□□ -2.37
RPH1P39956 YBL109WYBL109W 336 nt0.26□□□□□ -2.37
RPH1P39956 YER090C-AYER090C-A 90 nt0.25□□□□□ -2.37
RPH1P39956 YMR326CYMR326C 309 nt0.25□□□□□ -2.37
RPH1P39956 snR50snR50 90 nt0.25□□□□□ -2.37
RPH1P39956 YOL013W-AYOL013W-A 192 nt0.23□□□□□ -2.37
RPH1P39956 SOV1YMR066W 2697 nt0.22□□□□□ -2.37
RPH1P39956 ESP1YGR098C 4893 nt0.22□□□□□ -2.37
RPH1P39956 YDR524C-AYDR524C-A 120 nt0.19□□□□□ -2.38
RPH1P39956 YER078W-AYER078W-A 165 nt0.19□□□□□ -2.38
RPH1P39956 YHR217CYHR217C 462 nt0.19□□□□□ -2.38
RPH1P39956 YOL164W-AYOL164W-A 183 nt0.17□□□□□ -2.38
RPH1P39956 YML054C-AYML054C-A 159 nt0.14□□□□□ -2.39
RPH1P39956 snR128snR128 126 nt0.13□□□□□ -2.39
RPH1P39956 tS(GCU)Q1tS(GCU)Q1 86 nt0.12□□□□□ -2.39
RPH1P39956 YHR180C-BYHR180C-B 105 nt0.11□□□□□ -2.39
RPH1P39956 YBL100W-CYBL100W-C 120 nt0.11□□□□□ -2.39
RPH1P39956 snR67snR67 82 nt0.09□□□□□ -2.4
RPH1P39956 YGR240C-AYGR240C-A 201 nt0.09□□□□□ -2.4
RPH1P39956 YML100W-AYML100W-A 174 nt0.08□□□□□ -2.4
RPH1P39956 snR47snR47 99 nt0.08□□□□□ -2.4
RPH1P39956 snR62snR62 100 nt0.03□□□□□ -2.4
RPH1P39956 YBR109W-AYBR109W-A 225 nt0□□□□□ -2.41
RPH1P39956 RPL41AYDL184C 78 nt-0.01□□□□□ -2.41
RPH1P39956 snR45snR45 172 nt-0.01□□□□□ -2.41
RPH1P39956 YDR034C-AYDR034C-A 177 nt-0.02□□□□□ -2.41
RPH1P39956 YBR296C-AYBR296C-A 120 nt-0.04□□□□□ -2.42
RPH1P39956 YDL247W-AYDL247W-A 75 nt-0.05□□□□□ -2.42
RPH1P39956 SKI7YOR076C 2244 nt-0.06□□□□□ -2.42
RPH1P39956 YLL066W-BYLL066W-B 171 nt-0.07□□□□□ -2.42
RPH1P39956 PAU9YBL108C-A 129 nt-0.07□□□□□ -2.42
RPH1P39956 snR38snR38 95 nt-0.08□□□□□ -2.42
RPH1P39956 YKL225WYKL225W 348 nt-0.14□□□□□ -2.43
RPH1P39956 SBH2YER019C-A 267 nt-0.15□□□□□ -2.43
RPH1P39956 tA(UGC)QtA(UGC)Q 76 nt-0.17□□□□□ -2.44
RPH1P39956 YJL113WYJL113W 4647 nt-0.26□□□□□ -2.45
RPH1P39956 YKL106C-AYKL106C-A 120 nt-0.27□□□□□ -2.45
RPH1P39956 snR64snR64 101 nt-0.28□□□□□ -2.45
RPH1P39956 YOR376W-AYOR376W-A 156 nt-0.32□□□□□ -2.46
RPH1P39956 snR161snR161 161 nt-0.38□□□□□ -2.47
RPH1P39956 YDL159W-AYDL159W-A 132 nt-0.4□□□□□ -2.47
RPH1P39956 URB1YKL014C 5295 nt-0.41□□□□□ -2.48
RPH1P39956 YOR316C-AYOR316C-A 210 nt-0.44□□□□□ -2.48
RPH1P39956 YGR122C-AYGR122C-A 129 nt-0.45□□□□□ -2.48
RPH1P39956 snR53snR53 91 nt-0.45□□□□□ -2.48
RPH1P39956 tT(UGU)G1tT(UGU)G1 72 nt-0.56□□□□□ -2.5
RPH1P39956 tT(UGU)G2tT(UGU)G2 72 nt-0.56□□□□□ -2.5
Retrieved 100 of 7,029 protein–RNA pairs in 56.5 ms