Protein–RNA interactions for Protein: P39904

VPS52, Vacuolar protein sorting-associated protein 52, yeastyeast

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS52P39904 RPS26AYGL189C 360 nt0.56□□□□□ -2.32
VPS52P39904 BUL2YML111W 2763 nt0.55□□□□□ -2.32
VPS52P39904 YDR371C-AYDR371C-A 105 nt0.55□□□□□ -2.32
VPS52P39904 YGR146C-AYGR146C-A 162 nt0.55□□□□□ -2.32
VPS52P39904 YOL014WYOL014W 375 nt0.55□□□□□ -2.32
VPS52P39904 CSE1YGL238W 2883 nt0.55□□□□□ -2.32
VPS52P39904 UTP10YJL109C 5310 nt0.53□□□□□ -2.32
VPS52P39904 ATP8Q0080 147 nt0.51□□□□□ -2.33
VPS52P39904 YNL170WYNL170W 396 nt0.51□□□□□ -2.33
VPS52P39904 SBH1YER087C-B 249 nt0.49□□□□□ -2.33
VPS52P39904 ORC3YLL004W 1851 nt0.48□□□□□ -2.33
VPS52P39904 YCR095W-AYCR095W-A 159 nt0.48□□□□□ -2.33
VPS52P39904 Q0092Q0092 141 nt0.48□□□□□ -2.33
VPS52P39904 SOM1YEL059C-A 225 nt0.47□□□□□ -2.33
VPS52P39904 IQG1YPL242C 4488 nt0.47□□□□□ -2.33
VPS52P39904 RCO1YMR075W 2055 nt0.47□□□□□ -2.33
VPS52P39904 YNL205CYNL205C 423 nt0.46□□□□□ -2.34
VPS52P39904 YCL001W-BYCL001W-B 255 nt0.45□□□□□ -2.34
VPS52P39904 AI1Q0050 2505 nt0.43□□□□□ -2.34
VPS52P39904 BIR1YJR089W 2865 nt0.43□□□□□ -2.34
VPS52P39904 FMP27YLR454W 7887 nt0.42□□□□□ -2.34
VPS52P39904 YBL100W-BYBL100W-B 5313 nt0.41□□□□□ -2.34
VPS52P39904 YOR186C-AYOR186C-A 210 nt0.39□□□□□ -2.35
VPS52P39904 YBR099CYBR099C 384 nt0.39□□□□□ -2.35
VPS52P39904 YPL060C-AYPL060C-A 3315 nt0.38□□□□□ -2.35
VPS52P39904 PMP2YEL017C-A 132 nt0.38□□□□□ -2.35
VPS52P39904 YIL071W-AYIL071W-A 477 nt0.38□□□□□ -2.35
VPS52P39904 MLP2YIL149C 5040 nt0.38□□□□□ -2.35
VPS52P39904 YJL077W-AYJL077W-A 87 nt0.37□□□□□ -2.35
VPS52P39904 EST1YLR233C 2100 nt0.34□□□□□ -2.35
VPS52P39904 snR69snR69 101 nt0.34□□□□□ -2.36
VPS52P39904 YNL266WYNL266W 420 nt0.34□□□□□ -2.36
VPS52P39904 THO2YNL139C 4794 nt0.33□□□□□ -2.36
VPS52P39904 SEC10YLR166C 2616 nt0.33□□□□□ -2.36
VPS52P39904 tD(GUC)QtD(GUC)Q 75 nt0.28□□□□□ -2.36
VPS52P39904 RDS3YPR094W 324 nt0.28□□□□□ -2.36
VPS52P39904 ESP1YGR098C 4893 nt0.27□□□□□ -2.37
VPS52P39904 tQ(UUG)QtQ(UUG)Q 76 nt0.27□□□□□ -2.37
VPS52P39904 YBR178WYBR178W 375 nt0.27□□□□□ -2.37
VPS52P39904 YBR196C-AYBR196C-A 150 nt0.26□□□□□ -2.37
VPS52P39904 YNL054W-BYNL054W-B 5250 nt0.24□□□□□ -2.37
VPS52P39904 YOL013W-AYOL013W-A 192 nt0.24□□□□□ -2.37
VPS52P39904 MYO1YHR023W 5787 nt0.24□□□□□ -2.37
VPS52P39904 YER078W-AYER078W-A 165 nt0.22□□□□□ -2.37
VPS52P39904 YLR286W-AYLR286W-A 135 nt0.19□□□□□ -2.38
VPS52P39904 YDL159C-BYDL159C-B 177 nt0.18□□□□□ -2.38
VPS52P39904 SOV1YMR066W 2697 nt0.17□□□□□ -2.38
VPS52P39904 YER090C-AYER090C-A 90 nt0.15□□□□□ -2.39
VPS52P39904 YLR299C-AYLR299C-A 93 nt0.13□□□□□ -2.39
VPS52P39904 snR128snR128 126 nt0.11□□□□□ -2.39
VPS52P39904 Q0143Q0143 153 nt0.1□□□□□ -2.39
VPS52P39904 YNL103W-AYNL103W-A 90 nt0.1□□□□□ -2.39
VPS52P39904 snR50snR50 90 nt0.09□□□□□ -2.4
VPS52P39904 snR61snR61 90 nt0.08□□□□□ -2.4
VPS52P39904 YAL037C-AYAL037C-A 93 nt0.05□□□□□ -2.4
VPS52P39904 YOL083C-AYOL083C-A 141 nt0.03□□□□□ -2.4
VPS52P39904 snR45snR45 172 nt0.01□□□□□ -2.41
VPS52P39904 snR81snR81 201 nt0□□□□□ -2.41
VPS52P39904 YGL041C-BYGL041C-B 183 nt0□□□□□ -2.41
VPS52P39904 YML100W-AYML100W-A 174 nt0□□□□□ -2.41
VPS52P39904 snR85snR85 171 nt-0.01□□□□□ -2.41
VPS52P39904 snR67snR67 82 nt-0.02□□□□□ -2.41
VPS52P39904 YBL071C-BYBL071C-B 99 nt-0.02□□□□□ -2.41
VPS52P39904 TFB5YDR079C-A 219 nt-0.03□□□□□ -2.41
VPS52P39904 YHR180C-BYHR180C-B 105 nt-0.06□□□□□ -2.42
VPS52P39904 YML054C-AYML054C-A 159 nt-0.07□□□□□ -2.42
VPS52P39904 YOL164W-AYOL164W-A 183 nt-0.08□□□□□ -2.42
VPS52P39904 YBL100W-CYBL100W-C 120 nt-0.09□□□□□ -2.42
VPS52P39904 YMR326CYMR326C 309 nt-0.12□□□□□ -2.43
VPS52P39904 SBH2YER019C-A 267 nt-0.15□□□□□ -2.43
VPS52P39904 PAU9YBL108C-A 129 nt-0.15□□□□□ -2.43
VPS52P39904 YGR240C-AYGR240C-A 201 nt-0.18□□□□□ -2.44
VPS52P39904 snR47snR47 99 nt-0.2□□□□□ -2.44
VPS52P39904 YHR217CYHR217C 462 nt-0.21□□□□□ -2.44
VPS52P39904 RPL41AYDL184C 78 nt-0.22□□□□□ -2.44
VPS52P39904 SKI7YOR076C 2244 nt-0.23□□□□□ -2.45
VPS52P39904 tA(UGC)QtA(UGC)Q 76 nt-0.24□□□□□ -2.45
VPS52P39904 YBR296C-AYBR296C-A 120 nt-0.24□□□□□ -2.45
VPS52P39904 YBR109W-AYBR109W-A 225 nt-0.25□□□□□ -2.45
VPS52P39904 tS(GCU)Q1tS(GCU)Q1 86 nt-0.26□□□□□ -2.45
VPS52P39904 YBL109WYBL109W 336 nt-0.27□□□□□ -2.45
VPS52P39904 snR62snR62 100 nt-0.28□□□□□ -2.45
VPS52P39904 YDR524C-AYDR524C-A 120 nt-0.32□□□□□ -2.46
VPS52P39904 YDR034C-AYDR034C-A 177 nt-0.33□□□□□ -2.46
VPS52P39904 snR38snR38 95 nt-0.36□□□□□ -2.47
VPS52P39904 YJL113WYJL113W 4647 nt-0.41□□□□□ -2.47
VPS52P39904 YKL225WYKL225W 348 nt-0.42□□□□□ -2.48
VPS52P39904 YKL106C-AYKL106C-A 120 nt-0.46□□□□□ -2.48
VPS52P39904 snR161snR161 161 nt-0.49□□□□□ -2.49
VPS52P39904 YDL247W-AYDL247W-A 75 nt-0.5□□□□□ -2.49
VPS52P39904 YLL066W-BYLL066W-B 171 nt-0.5□□□□□ -2.49
VPS52P39904 YOR376W-AYOR376W-A 156 nt-0.52□□□□□ -2.49
VPS52P39904 YHL009W-BYHL009W-B 5409 nt-0.52□□□□□ -2.49
VPS52P39904 snR64snR64 101 nt-0.6□□□□□ -2.51
VPS52P39904 URB1YKL014C 5295 nt-0.61□□□□□ -2.51
VPS52P39904 YOR316C-AYOR316C-A 210 nt-0.61□□□□□ -2.51
VPS52P39904 tT(UGU)G1tT(UGU)G1 72 nt-0.66□□□□□ -2.52
VPS52P39904 tT(UGU)G2tT(UGU)G2 72 nt-0.66□□□□□ -2.52
VPS52P39904 tT(UGU)PtT(UGU)P 72 nt-0.66□□□□□ -2.52
VPS52P39904 snR33snR33 183 nt-0.71□□□□□ -2.52
Retrieved 100 of 7,029 protein–RNA pairs in 239 ms