Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
CIITAP33076 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
CIITAP33076 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC22.51■■□□□ 1.19
CIITAP33076 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC22.51■■□□□ 1.19
CIITAP33076 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC22.51■■□□□ 1.19
CIITAP33076 RPPH1-201ENST00000516869 333 ntBASIC22.51■■□□□ 1.19
CIITAP33076 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CIITAP33076 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC22.51■■□□□ 1.19
CIITAP33076 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CIITAP33076 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC22.51■■□□□ 1.19
CIITAP33076 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CIITAP33076 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CIITAP33076 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CIITAP33076 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CIITAP33076 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC22.5■■□□□ 1.19
CIITAP33076 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC22.5■■□□□ 1.19
CIITAP33076 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CIITAP33076 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
CIITAP33076 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
CIITAP33076 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC22.5■■□□□ 1.19
CIITAP33076 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC22.5■■□□□ 1.19
CIITAP33076 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC22.5■■□□□ 1.19
CIITAP33076 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC22.5■■□□□ 1.19
CIITAP33076 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
CIITAP33076 LINC01521-201ENST00000504184 1943 ntBASIC22.5■■□□□ 1.19
CIITAP33076 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CIITAP33076 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
CIITAP33076 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
CIITAP33076 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
CIITAP33076 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CIITAP33076 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC22.5■■□□□ 1.19
CIITAP33076 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CIITAP33076 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CIITAP33076 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CIITAP33076 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
CIITAP33076 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CIITAP33076 AC099778.1-201ENST00000568593 1911 ntBASIC22.49■■□□□ 1.19
CIITAP33076 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
CIITAP33076 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CIITAP33076 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC22.49■■□□□ 1.19
CIITAP33076 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC22.49■■□□□ 1.19
CIITAP33076 ISG20-202ENST00000379224 540 ntTSL 3 BASIC22.49■■□□□ 1.19
CIITAP33076 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC22.49■■□□□ 1.19
CIITAP33076 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC22.49■■□□□ 1.19
CIITAP33076 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC22.49■■□□□ 1.19
CIITAP33076 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC22.49■■□□□ 1.19
CIITAP33076 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
CIITAP33076 LY6E-205ENST00000519611 635 ntTSL 3 BASIC22.49■■□□□ 1.19
CIITAP33076 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC22.49■■□□□ 1.19
CIITAP33076 C1QBPP2-201ENST00000528754 825 ntBASIC22.49■■□□□ 1.19
CIITAP33076 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC22.49■■□□□ 1.19
CIITAP33076 AC142381.4-202ENST00000563973 229 ntBASIC22.49■■□□□ 1.19
CIITAP33076 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CIITAP33076 AC124016.1-201ENST00000609552 612 ntBASIC22.49■■□□□ 1.19
CIITAP33076 Six3os1_6.1-201ENST00000620790 196 ntBASIC22.49■■□□□ 1.19
CIITAP33076 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CIITAP33076 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
CIITAP33076 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC22.49■■□□□ 1.19
CIITAP33076 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CIITAP33076 PHGDH-210ENST00000641115 1638 ntBASIC22.49■■□□□ 1.19
CIITAP33076 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
CIITAP33076 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC22.49■■□□□ 1.19
CIITAP33076 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CIITAP33076 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC22.48■■□□□ 1.19
CIITAP33076 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
CIITAP33076 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
CIITAP33076 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CIITAP33076 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CIITAP33076 TFP1-202ENST00000475455 1573 ntBASIC22.48■■□□□ 1.19
CIITAP33076 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CIITAP33076 PNN-205ENST00000556530 601 ntTSL 2 BASIC22.48■■□□□ 1.19
CIITAP33076 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
CIITAP33076 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
CIITAP33076 AL023875.1-201ENST00000640777 796 ntBASIC22.48■■□□□ 1.19
CIITAP33076 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CIITAP33076 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CIITAP33076 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
CIITAP33076 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC22.48■■□□□ 1.19
CIITAP33076 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC22.48■■□□□ 1.19
CIITAP33076 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CIITAP33076 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CIITAP33076 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CIITAP33076 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC22.47■■□□□ 1.19
CIITAP33076 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC22.47■■□□□ 1.19
CIITAP33076 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CIITAP33076 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CIITAP33076 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CIITAP33076 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC22.47■■□□□ 1.19
CIITAP33076 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
CIITAP33076 AC018553.1-201ENST00000616682 1458 ntBASIC22.47■■□□□ 1.19
CIITAP33076 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
CIITAP33076 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CIITAP33076 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CIITAP33076 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC22.46■■□□□ 1.19
CIITAP33076 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CIITAP33076 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC22.46■■□□□ 1.19
CIITAP33076 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CIITAP33076 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CIITAP33076 PRKY-204ENST00000533551 1019 ntBASIC22.46■■□□□ 1.19
CIITAP33076 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms