Protein–RNA interactions for Protein: P32842

VMA11, V-type proton ATPase subunit c', yeast

Predictions only

Length 164 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA11	P32842	YOR381W-A	YOR381W-A	168 nt		-0.47	□□□□□ -2.48
VMA11	P32842	YOL155W-A	YOL155W-A	135 nt		-0.52	□□□□□ -2.49
VMA11	P32842	YOR302W	YOR302W	78 nt		-0.52	□□□□□ -2.49
VMA11	P32842	URB1	YKL014C	5295 nt		-0.53	□□□□□ -2.49
VMA11	P32842	snR69	snR69	101 nt		-0.53	□□□□□ -2.49
VMA11	P32842	YNL067W-B	YNL067W-B	141 nt		-0.54	□□□□□ -2.5
VMA11	P32842	tA(UGC)Q	tA(UGC)Q	76 nt		-0.55	□□□□□ -2.5
VMA11	P32842	YIL071W-A	YIL071W-A	477 nt		-0.55	□□□□□ -2.5
VMA11	P32842	tM(CAU)Q2	tM(CAU)Q2	78 nt		-0.57	□□□□□ -2.5
VMA11	P32842	YGR146C-A	YGR146C-A	162 nt		-0.57	□□□□□ -2.5
VMA11	P32842	YHL009W-B	YHL009W-B	5409 nt		-0.57	□□□□□ -2.5
VMA11	P32842	YOR231C-A	YOR231C-A	201 nt		-0.59	□□□□□ -2.5
VMA11	P32842	snR39B	snR39B	96 nt		-0.59	□□□□□ -2.5
VMA11	P32842	YDR524W-C	YDR524W-C	90 nt		-0.61	□□□□□ -2.51
VMA11	P32842	tQ(UUG)Q	tQ(UUG)Q	76 nt		-0.62	□□□□□ -2.51
VMA11	P32842	YOR329W-A	YOR329W-A	210 nt		-0.62	□□□□□ -2.51
VMA11	P32842	PMP2	YEL017C-A	132 nt		-0.64	□□□□□ -2.51
VMA11	P32842	YGL188C-A	YGL188C-A	141 nt		-0.64	□□□□□ -2.51
VMA11	P32842	YER090C-A	YER090C-A	90 nt		-0.65	□□□□□ -2.51
VMA11	P32842	RDS3	YPR094W	324 nt		-0.65	□□□□□ -2.51
VMA11	P32842	YNL266W	YNL266W	420 nt		-0.66	□□□□□ -2.52
VMA11	P32842	snR48	snR48	113 nt		-0.66	□□□□□ -2.52
VMA11	P32842	snR80	snR80	171 nt		-0.7	□□□□□ -2.52
VMA11	P32842	PAU9	YBL108C-A	129 nt		-0.7	□□□□□ -2.52
VMA11	P32842	snR50	snR50	90 nt		-0.7	□□□□□ -2.52
VMA11	P32842	tT(UGU)G1	tT(UGU)G1	72 nt		-0.73	□□□□□ -2.53
VMA11	P32842	tT(UGU)G2	tT(UGU)G2	72 nt		-0.73	□□□□□ -2.53
VMA11	P32842	tT(UGU)P	tT(UGU)P	72 nt		-0.73	□□□□□ -2.53
VMA11	P32842	JLP2	YMR132C	627 nt		-0.73	□□□□□ -2.53
VMA11	P32842	tL(UAA)Q	tL(UAA)Q	85 nt		-0.74	□□□□□ -2.53
VMA11	P32842	tD(GUC)Q	tD(GUC)Q	75 nt		-0.77	□□□□□ -2.53
VMA11	P32842	YNL205C	YNL205C	423 nt		-0.79	□□□□□ -2.54
VMA11	P32842	snR52	snR52	92 nt		-0.79	□□□□□ -2.54
VMA11	P32842	snR33	snR33	183 nt		-0.81	□□□□□ -2.54
VMA11	P32842	YLR286W-A	YLR286W-A	135 nt		-0.82	□□□□□ -2.54
VMA11	P32842	YLR342W-A	YLR342W-A	174 nt		-0.82	□□□□□ -2.54
VMA11	P32842	snR67	snR67	82 nt		-0.85	□□□□□ -2.55
VMA11	P32842	YBR178W	YBR178W	375 nt		-0.85	□□□□□ -2.55
VMA11	P32842	YDL159C-B	YDL159C-B	177 nt		-0.89	□□□□□ -2.55
VMA11	P32842	YHL015W-A	YHL015W-A	84 nt		-0.89	□□□□□ -2.55
VMA11	P32842	YOR102W	YOR102W	351 nt		-0.89	□□□□□ -2.55
VMA11	P32842	snR161	snR161	161 nt		-0.89	□□□□□ -2.55
VMA11	P32842	SKI7	YOR076C	2244 nt		-0.89	□□□□□ -2.55
VMA11	P32842	YNR077C	YNR077C	255 nt		-0.98	□□□□□ -2.57
VMA11	P32842	Q0142	Q0142	177 nt		-0.99	□□□□□ -2.57
VMA11	P32842	YBR223W-A	YBR223W-A	120 nt		-0.99	□□□□□ -2.57
VMA11	P32842	YDR406W-A	YDR406W-A	246 nt		-1	□□□□□ -2.57
VMA11	P32842	YJL150W	YJL150W	303 nt		-1.02	□□□□□ -2.57
VMA11	P32842	YLR299C-A	YLR299C-A	93 nt		-1.02	□□□□□ -2.57
VMA11	P32842	YNL198C	YNL198C	303 nt		-1.02	□□□□□ -2.57
VMA11	P32842	YBR196C-A	YBR196C-A	150 nt		-1.02	□□□□□ -2.57
VMA11	P32842	YBL053W	YBL053W	375 nt		-1.07	□□□□□ -2.58
VMA11	P32842	YML054C-A	YML054C-A	159 nt		-1.12	□□□□□ -2.59
VMA11	P32842	YMR046W-A	YMR046W-A	129 nt		-1.14	□□□□□ -2.59
VMA11	P32842	tP(UGG)Q	tP(UGG)Q	72 nt		-1.15	□□□□□ -2.59
VMA11	P32842	SOM1	YEL059C-A	225 nt		-1.17	□□□□□ -2.6
VMA11	P32842	YCR095W-A	YCR095W-A	159 nt		-1.24	□□□□□ -2.61
VMA11	P32842	SPG3	YDR504C	384 nt		-1.24	□□□□□ -2.61
VMA11	P32842	CDC65	tQ(CUG)M	72 nt		-1.28	□□□□□ -2.61
VMA11	P32842	YHR180C-B	YHR180C-B	105 nt		-1.29	□□□□□ -2.62
VMA11	P32842	snR77	snR77	88 nt		-1.3	□□□□□ -2.62
VMA11	P32842	YGR240C-A	YGR240C-A	201 nt		-1.3	□□□□□ -2.62
VMA11	P32842	YOR376W-A	YOR376W-A	156 nt		-1.3	□□□□□ -2.62
VMA11	P32842	tM(CAU)Q1	tM(CAU)Q1	76 nt		-1.33	□□□□□ -2.62
VMA11	P32842	YGR151C	YGR151C	336 nt		-1.45	□□□□□ -2.64
VMA11	P32842	YLR466C-B	YLR466C-B	117 nt		-1.45	□□□□□ -2.64
VMA11	P32842	YBR109W-A	YBR109W-A	225 nt		-1.45	□□□□□ -2.64
VMA11	P32842	YOR316C-A	YOR316C-A	210 nt		-1.46	□□□□□ -2.64
VMA11	P32842	YKL106C-A	YKL106C-A	120 nt		-1.47	□□□□□ -2.64
VMA11	P32842	YBL071C-B	YBL071C-B	99 nt		-1.48	□□□□□ -2.65
VMA11	P32842	YBR296C-A	YBR296C-A	120 nt		-1.48	□□□□□ -2.65
VMA11	P32842	YCL001W-B	YCL001W-B	255 nt		-1.49	□□□□□ -2.65
VMA11	P32842	YOL083C-A	YOL083C-A	141 nt		-1.5	□□□□□ -2.65
VMA11	P32842	RPL41A	YDL184C	78 nt		-1.52	□□□□□ -2.65
VMA11	P32842	YMR315W-A	YMR315W-A	108 nt		-1.52	□□□□□ -2.65
VMA11	P32842	tY(GUA)Q	tY(GUA)Q	84 nt		-1.53	□□□□□ -2.65
VMA11	P32842	snR38	snR38	95 nt		-1.53	□□□□□ -2.65
VMA11	P32842	snR81	snR81	201 nt		-1.57	□□□□□ -2.66
VMA11	P32842	YAL037C-A	YAL037C-A	93 nt		-1.57	□□□□□ -2.66
VMA11	P32842	YNL338W	YNL338W	159 nt		-1.58	□□□□□ -2.66
VMA11	P32842	YOL164W-A	YOL164W-A	183 nt		-1.58	□□□□□ -2.66
VMA11	P32842	snR47	snR47	99 nt		-1.7	□□□□□ -2.68
VMA11	P32842	YNL337W	YNL337W	255 nt		-1.72	□□□□□ -2.68
VMA11	P32842	YBL100W-C	YBL100W-C	120 nt		-1.75	□□□□□ -2.69
VMA11	P32842	Q0032	Q0032	291 nt		-1.79	□□□□□ -2.7
VMA11	P32842	YOR309C	YOR309C	381 nt		-1.81	□□□□□ -2.7
VMA11	P32842	YGL007C-A	YGL007C-A	87 nt		-1.86	□□□□□ -2.71
VMA11	P32842	YBR126W-B	YBR126W-B	144 nt		-1.89	□□□□□ -2.71
VMA11	P32842	snR6	snR6	112 nt		-1.9	□□□□□ -2.71
VMA11	P32842	tS(GCU)Q1	tS(GCU)Q1	86 nt		-1.9	□□□□□ -2.71
VMA11	P32842	YKL225W	YKL225W	348 nt		-1.9	□□□□□ -2.71
VMA11	P32842	YGL041C-B	YGL041C-B	183 nt		-1.99	□□□□□ -2.73
VMA11	P32842	snR61	snR61	90 nt		-2.02	□□□□□ -2.73
VMA11	P32842	tV(UAC)Q	tV(UAC)Q	76 nt		-2.02	□□□□□ -2.73
VMA11	P32842	YOR335W-A	YOR335W-A	81 nt		-2.02	□□□□□ -2.73
VMA11	P32842	YNL103W-A	YNL103W-A	90 nt		-2.03	□□□□□ -2.73
VMA11	P32842	YDL114W-A	YDL114W-A	114 nt		-2.07	□□□□□ -2.74
VMA11	P32842	snR73	snR73	106 nt		-2.09	□□□□□ -2.74
VMA11	P32842	YDR034C-A	YDR034C-A	177 nt		-2.11	□□□□□ -2.75
VMA11	P32842	snR62	snR62	100 nt		-2.13	□□□□□ -2.75

Retrieved 100 of 7,029 protein–RNA pairs in 22.3 ms