Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
COL5A3P25940 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC25.33■■□□□ 1.65
COL5A3P25940 AC116351.2-201ENST00000606540 1585 ntBASIC25.33■■□□□ 1.65
COL5A3P25940 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
COL5A3P25940 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
COL5A3P25940 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC25.33■■□□□ 1.64
COL5A3P25940 AP006587.1-201ENST00000534129 1502 ntBASIC25.32■■□□□ 1.64
COL5A3P25940 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
COL5A3P25940 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
COL5A3P25940 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
COL5A3P25940 AC063952.2-201ENST00000498792 1227 ntBASIC25.32■■□□□ 1.64
COL5A3P25940 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC25.32■■□□□ 1.64
COL5A3P25940 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC25.32■■□□□ 1.64
COL5A3P25940 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
COL5A3P25940 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
COL5A3P25940 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC25.32■■□□□ 1.64
COL5A3P25940 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
COL5A3P25940 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
COL5A3P25940 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
COL5A3P25940 RCC2P6-201ENST00000526625 1557 ntBASIC25.32■■□□□ 1.64
COL5A3P25940 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
COL5A3P25940 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
COL5A3P25940 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
COL5A3P25940 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC25.32■■□□□ 1.64
COL5A3P25940 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC25.32■■□□□ 1.64
COL5A3P25940 FDX2-206ENST00000492239 773 ntTSL 2 BASIC25.32■■□□□ 1.64
COL5A3P25940 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC25.32■■□□□ 1.64
COL5A3P25940 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC25.32■■□□□ 1.64
COL5A3P25940 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
COL5A3P25940 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
COL5A3P25940 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL5A3P25940 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL5A3P25940 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL5A3P25940 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
COL5A3P25940 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC25.31■■□□□ 1.64
COL5A3P25940 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL5A3P25940 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL5A3P25940 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC25.31■■□□□ 1.64
COL5A3P25940 FAM87A-204ENST00000613235 858 ntBASIC25.31■■□□□ 1.64
COL5A3P25940 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
COL5A3P25940 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
COL5A3P25940 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
COL5A3P25940 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL5A3P25940 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC25.31■■□□□ 1.64
COL5A3P25940 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
COL5A3P25940 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
COL5A3P25940 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
COL5A3P25940 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC25.3■■□□□ 1.64
COL5A3P25940 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC25.3■■□□□ 1.64
COL5A3P25940 AC087388.1-201ENST00000571370 1112 ntBASIC25.3■■□□□ 1.64
COL5A3P25940 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
COL5A3P25940 AC005229.4-201ENST00000610085 2198 ntBASIC25.3■■□□□ 1.64
COL5A3P25940 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC25.3■■□□□ 1.64
COL5A3P25940 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
COL5A3P25940 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC25.3■■□□□ 1.64
COL5A3P25940 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
COL5A3P25940 AC096733.2-201ENST00000609937 1394 ntBASIC25.3■■□□□ 1.64
COL5A3P25940 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
COL5A3P25940 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
COL5A3P25940 AK4P3-201ENST00000418260 669 ntBASIC25.29■■□□□ 1.64
COL5A3P25940 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC25.29■■□□□ 1.64
COL5A3P25940 AC128688.1-201ENST00000487626 519 ntBASIC25.29■■□□□ 1.64
COL5A3P25940 USF2-205ENST00000594064 1179 ntTSL 2 BASIC25.29■■□□□ 1.64
COL5A3P25940 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
COL5A3P25940 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
COL5A3P25940 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
COL5A3P25940 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC25.29■■□□□ 1.64
COL5A3P25940 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
COL5A3P25940 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
COL5A3P25940 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
COL5A3P25940 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC25.29■■□□□ 1.64
COL5A3P25940 TFP1-202ENST00000475455 1573 ntBASIC25.29■■□□□ 1.64
COL5A3P25940 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC25.29■■□□□ 1.64
COL5A3P25940 AC117947.1-201ENST00000427448 529 ntBASIC25.29■■□□□ 1.64
COL5A3P25940 LIN28AP1-201ENST00000429574 405 ntBASIC25.29■■□□□ 1.64
COL5A3P25940 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC25.29■■□□□ 1.64
COL5A3P25940 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC25.29■■□□□ 1.64
COL5A3P25940 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
COL5A3P25940 AC097488.1-201ENST00000507834 756 ntBASIC25.29■■□□□ 1.64
COL5A3P25940 METTL23-204ENST00000586752 904 ntTSL 2 BASIC25.29■■□□□ 1.64
COL5A3P25940 GRAMD4P8-201ENST00000605465 1115 ntBASIC25.29■■□□□ 1.64
COL5A3P25940 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC25.28■■□□□ 1.64
COL5A3P25940 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
COL5A3P25940 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
COL5A3P25940 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC25.28■■□□□ 1.64
COL5A3P25940 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC25.28■■□□□ 1.64
COL5A3P25940 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC25.28■■□□□ 1.64
COL5A3P25940 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
COL5A3P25940 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
COL5A3P25940 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
COL5A3P25940 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC25.28■■□□□ 1.64
COL5A3P25940 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC25.28■■□□□ 1.64
COL5A3P25940 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
COL5A3P25940 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC25.28■■□□□ 1.64
COL5A3P25940 EGLN1P1-201ENST00000531623 762 ntBASIC25.28■■□□□ 1.64
COL5A3P25940 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC25.28■■□□□ 1.64
COL5A3P25940 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
COL5A3P25940 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC25.28■■□□□ 1.64
COL5A3P25940 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC25.27■■□□□ 1.64
COL5A3P25940 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms