Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.75■□□□□ 0.91
VCANP13611 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.75■□□□□ 0.91
VCANP13611 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.75■□□□□ 0.91
VCANP13611 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VCANP13611 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VCANP13611 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VCANP13611 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VCANP13611 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VCANP13611 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VCANP13611 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.74■□□□□ 0.91
VCANP13611 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.74■□□□□ 0.91
VCANP13611 AC092338.2-201ENST00000568827 1415 ntBASIC20.74■□□□□ 0.91
VCANP13611 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.74■□□□□ 0.91
VCANP13611 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VCANP13611 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
VCANP13611 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC20.74■□□□□ 0.91
VCANP13611 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20.74■□□□□ 0.91
VCANP13611 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC20.74■□□□□ 0.91
VCANP13611 HOMER2P1-201ENST00000455653 964 ntBASIC20.74■□□□□ 0.91
VCANP13611 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.74■□□□□ 0.91
VCANP13611 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VCANP13611 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VCANP13611 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VCANP13611 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VCANP13611 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VCANP13611 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VCANP13611 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VCANP13611 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
VCANP13611 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VCANP13611 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VCANP13611 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VCANP13611 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
VCANP13611 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VCANP13611 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.73■□□□□ 0.91
VCANP13611 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VCANP13611 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.73■□□□□ 0.91
VCANP13611 MIR1233-2-201ENST00000408138 82 ntBASIC20.73■□□□□ 0.91
VCANP13611 MIR1233-1-201ENST00000408722 82 ntBASIC20.73■□□□□ 0.91
VCANP13611 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC20.73■□□□□ 0.91
VCANP13611 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
VCANP13611 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
VCANP13611 FAAHP1-202ENST00000446499 1238 ntBASIC20.72■□□□□ 0.91
VCANP13611 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
VCANP13611 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.72■□□□□ 0.91
VCANP13611 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VCANP13611 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VCANP13611 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VCANP13611 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VCANP13611 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
VCANP13611 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.72■□□□□ 0.91
VCANP13611 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
VCANP13611 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.72■□□□□ 0.91
VCANP13611 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.72■□□□□ 0.91
VCANP13611 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VCANP13611 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VCANP13611 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.71■□□□□ 0.91
VCANP13611 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.71■□□□□ 0.91
VCANP13611 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VCANP13611 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.71■□□□□ 0.91
VCANP13611 NME4-212ENST00000621774 904 ntTSL 3 BASIC20.71■□□□□ 0.91
VCANP13611 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VCANP13611 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.71■□□□□ 0.91
VCANP13611 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VCANP13611 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VCANP13611 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
VCANP13611 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
VCANP13611 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
VCANP13611 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
VCANP13611 AC007663.1-201ENST00000438948 1240 ntBASIC20.71■□□□□ 0.91
VCANP13611 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
VCANP13611 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VCANP13611 MIR574-201ENST00000385209 96 ntBASIC20.71■□□□□ 0.91
VCANP13611 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
VCANP13611 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VCANP13611 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VCANP13611 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
VCANP13611 AC139530.1-201ENST00000575312 1977 ntBASIC20.7■□□□□ 0.9
VCANP13611 AC096733.2-201ENST00000609937 1394 ntBASIC20.7■□□□□ 0.9
VCANP13611 AL136038.3-201ENST00000561909 1096 ntBASIC20.7■□□□□ 0.9
VCANP13611 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.7■□□□□ 0.9
VCANP13611 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VCANP13611 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VCANP13611 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VCANP13611 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
VCANP13611 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VCANP13611 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.7■□□□□ 0.9
VCANP13611 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.7■□□□□ 0.9
VCANP13611 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.7■□□□□ 0.9
VCANP13611 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VCANP13611 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VCANP13611 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.69■□□□□ 0.9
VCANP13611 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VCANP13611 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC20.69■□□□□ 0.9
VCANP13611 RNA5SP419-201ENST00000515908 135 ntBASIC20.69■□□□□ 0.9
VCANP13611 AL441883.1-201ENST00000566170 1045 ntBASIC20.69■□□□□ 0.9
VCANP13611 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
VCANP13611 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VCANP13611 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
VCANP13611 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VCANP13611 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms