Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RB1P06400 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RB1P06400 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
RB1P06400 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.18■□□□□ 0.98
RB1P06400 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
RB1P06400 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
RB1P06400 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.18■□□□□ 0.98
RB1P06400 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.17■□□□□ 0.98
RB1P06400 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RB1P06400 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.17■□□□□ 0.98
RB1P06400 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RB1P06400 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
RB1P06400 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
RB1P06400 AK4P3-201ENST00000418260 669 ntBASIC21.17■□□□□ 0.98
RB1P06400 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RB1P06400 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC21.17■□□□□ 0.98
RB1P06400 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RB1P06400 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC21.17■□□□□ 0.98
RB1P06400 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC21.17■□□□□ 0.98
RB1P06400 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
RB1P06400 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC21.17■□□□□ 0.98
RB1P06400 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RB1P06400 AC121338.2-201ENST00000622535 1744 ntBASIC21.17■□□□□ 0.98
RB1P06400 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RB1P06400 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
RB1P06400 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.17■□□□□ 0.98
RB1P06400 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
RB1P06400 AC233723.2-201ENST00000623798 2106 ntBASIC21.16■□□□□ 0.98
RB1P06400 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.16■□□□□ 0.98
RB1P06400 AC244015.2-201ENST00000616358 1861 ntBASIC21.16■□□□□ 0.98
RB1P06400 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RB1P06400 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
RB1P06400 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RB1P06400 PRR31-201ENST00000371629 978 ntTSL 2 BASIC21.16■□□□□ 0.98
RB1P06400 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC21.16■□□□□ 0.98
RB1P06400 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.16■□□□□ 0.98
RB1P06400 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.16■□□□□ 0.98
RB1P06400 AC011506.1-201ENST00000474329 610 ntBASIC21.16■□□□□ 0.98
RB1P06400 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC21.16■□□□□ 0.98
RB1P06400 AC091076.1-201ENST00000610741 619 ntBASIC21.16■□□□□ 0.98
RB1P06400 AC131212.4-201ENST00000623606 975 ntBASIC21.16■□□□□ 0.98
RB1P06400 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC21.16■□□□□ 0.98
RB1P06400 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
RB1P06400 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RB1P06400 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
RB1P06400 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.15■□□□□ 0.98
RB1P06400 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RB1P06400 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RB1P06400 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RB1P06400 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RB1P06400 CRYGFP-201ENST00000418459 633 ntBASIC21.15■□□□□ 0.98
RB1P06400 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RB1P06400 AC004980.1-204ENST00000429707 299 ntBASIC21.15■□□□□ 0.98
RB1P06400 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC21.15■□□□□ 0.98
RB1P06400 AC063952.2-201ENST00000498792 1227 ntBASIC21.15■□□□□ 0.98
RB1P06400 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RB1P06400 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RB1P06400 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RB1P06400 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.15■□□□□ 0.98
RB1P06400 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RB1P06400 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC21.15■□□□□ 0.98
RB1P06400 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
RB1P06400 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RB1P06400 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
RB1P06400 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
RB1P06400 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RB1P06400 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC21.14■□□□□ 0.97
RB1P06400 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
RB1P06400 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
RB1P06400 GUK1-204ENST00000366721 689 ntTSL 3 BASIC21.14■□□□□ 0.97
RB1P06400 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RB1P06400 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC21.14■□□□□ 0.97
RB1P06400 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RB1P06400 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RB1P06400 AC022616.7-201ENST00000525383 220 ntBASIC21.14■□□□□ 0.97
RB1P06400 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC21.14■□□□□ 0.97
RB1P06400 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21.14■□□□□ 0.97
RB1P06400 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.14■□□□□ 0.97
RB1P06400 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
RB1P06400 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RB1P06400 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RB1P06400 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
RB1P06400 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RB1P06400 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
RB1P06400 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RB1P06400 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RB1P06400 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC21.13■□□□□ 0.97
RB1P06400 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC21.13■□□□□ 0.97
RB1P06400 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RB1P06400 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC21.13■□□□□ 0.97
RB1P06400 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC21.13■□□□□ 0.97
RB1P06400 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
RB1P06400 FAM87A-204ENST00000613235 858 ntBASIC21.13■□□□□ 0.97
RB1P06400 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.13■□□□□ 0.97
RB1P06400 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RB1P06400 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RB1P06400 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RB1P06400 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.13■□□□□ 0.97
RB1P06400 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
RB1P06400 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms