Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SDCBPO00560 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDCBPO00560 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDCBPO00560 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SDCBPO00560 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
SDCBPO00560 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDCBPO00560 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDCBPO00560 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDCBPO00560 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SDCBPO00560 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC16.92■□□□□ 0.3
SDCBPO00560 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC16.92■□□□□ 0.3
SDCBPO00560 MYCNOS-205ENST00000641950 531 ntBASIC16.92■□□□□ 0.3
SDCBPO00560 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC16.92■□□□□ 0.3
SDCBPO00560 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDCBPO00560 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.92■□□□□ 0.3
SDCBPO00560 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
SDCBPO00560 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
SDCBPO00560 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
SDCBPO00560 AC020763.4-201ENST00000623414 4170 ntBASIC16.92■□□□□ 0.3
SDCBPO00560 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC16.91■□□□□ 0.3
SDCBPO00560 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
SDCBPO00560 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC16.91■□□□□ 0.3
SDCBPO00560 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDCBPO00560 AC004408.2-201ENST00000623613 2777 ntBASIC16.91■□□□□ 0.3
SDCBPO00560 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SDCBPO00560 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC16.91■□□□□ 0.3
SDCBPO00560 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC16.91■□□□□ 0.3
SDCBPO00560 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
SDCBPO00560 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SDCBPO00560 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDCBPO00560 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC16.91■□□□□ 0.3
SDCBPO00560 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDCBPO00560 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDCBPO00560 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC16.91■□□□□ 0.3
SDCBPO00560 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDCBPO00560 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDCBPO00560 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDCBPO00560 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDCBPO00560 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
SDCBPO00560 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC16.9■□□□□ 0.3
SDCBPO00560 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDCBPO00560 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC16.9■□□□□ 0.3
SDCBPO00560 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC16.9■□□□□ 0.3
SDCBPO00560 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC16.9■□□□□ 0.3
SDCBPO00560 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SDCBPO00560 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
SDCBPO00560 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC16.9■□□□□ 0.3
SDCBPO00560 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDCBPO00560 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SDCBPO00560 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDCBPO00560 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDCBPO00560 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDCBPO00560 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
SDCBPO00560 AC091799.1-201ENST00000422823 811 ntBASIC16.9■□□□□ 0.3
SDCBPO00560 AC007322.3-201ENST00000426526 701 ntBASIC16.9■□□□□ 0.3
SDCBPO00560 GXYLT1P2-201ENST00000433312 1230 ntBASIC16.9■□□□□ 0.3
SDCBPO00560 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC16.9■□□□□ 0.3
SDCBPO00560 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC16.9■□□□□ 0.3
SDCBPO00560 DBI-210ENST00000542275 757 ntTSL 5 BASIC16.9■□□□□ 0.3
SDCBPO00560 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC16.9■□□□□ 0.3
SDCBPO00560 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC16.9■□□□□ 0.3
SDCBPO00560 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
SDCBPO00560 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SDCBPO00560 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC16.9■□□□□ 0.3
SDCBPO00560 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
SDCBPO00560 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDCBPO00560 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SDCBPO00560 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDCBPO00560 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDCBPO00560 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC16.9■□□□□ 0.3
SDCBPO00560 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
SDCBPO00560 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDCBPO00560 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDCBPO00560 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
SDCBPO00560 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SDCBPO00560 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.3
SDCBPO00560 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
SDCBPO00560 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SDCBPO00560 POLI-202ENST00000406285 2030 ntTSL 2 BASIC16.89■□□□□ 0.29
SDCBPO00560 AC005332.7-201ENST00000614046 2005 ntBASIC16.89■□□□□ 0.29
SDCBPO00560 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC16.89■□□□□ 0.29
SDCBPO00560 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
SDCBPO00560 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.89■□□□□ 0.29
SDCBPO00560 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDCBPO00560 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDCBPO00560 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDCBPO00560 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDCBPO00560 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC16.89■□□□□ 0.29
SDCBPO00560 CDV3P1-201ENST00000471403 739 ntBASIC16.89■□□□□ 0.29
SDCBPO00560 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDCBPO00560 AC137761.2-201ENST00000561729 223 ntBASIC16.89■□□□□ 0.29
SDCBPO00560 RARRES2P6-201ENST00000567333 442 ntBASIC16.89■□□□□ 0.29
SDCBPO00560 AC145350.3-201ENST00000569033 163 ntBASIC16.89■□□□□ 0.29
SDCBPO00560 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC16.89■□□□□ 0.29
SDCBPO00560 TFG-210ENST00000620299 1289 ntTSL 5 BASIC16.89■□□□□ 0.29
SDCBPO00560 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SDCBPO00560 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC16.89■□□□□ 0.29
SDCBPO00560 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDCBPO00560 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDCBPO00560 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms