Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
HMGN4O00479 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
HMGN4O00479 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC18.55■□□□□ 0.56
HMGN4O00479 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.55■□□□□ 0.56
HMGN4O00479 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.55■□□□□ 0.56
HMGN4O00479 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.55■□□□□ 0.56
HMGN4O00479 AC080038.1-201ENST00000611274 1154 ntBASIC18.55■□□□□ 0.56
HMGN4O00479 IKBKGP1-201ENST00000612193 1073 ntBASIC18.55■□□□□ 0.56
HMGN4O00479 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.55■□□□□ 0.56
HMGN4O00479 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.55■□□□□ 0.56
HMGN4O00479 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGN4O00479 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.54■□□□□ 0.56
HMGN4O00479 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HMGN4O00479 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
HMGN4O00479 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGN4O00479 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HMGN4O00479 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.54■□□□□ 0.56
HMGN4O00479 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGN4O00479 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGN4O00479 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.54■□□□□ 0.56
HMGN4O00479 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGN4O00479 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGN4O00479 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.54■□□□□ 0.56
HMGN4O00479 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.54■□□□□ 0.56
HMGN4O00479 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.54■□□□□ 0.56
HMGN4O00479 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
HMGN4O00479 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.54■□□□□ 0.56
HMGN4O00479 AC133552.2-202ENST00000575694 574 ntBASIC18.54■□□□□ 0.56
HMGN4O00479 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.54■□□□□ 0.56
HMGN4O00479 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGN4O00479 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.54■□□□□ 0.56
HMGN4O00479 AC073111.5-205ENST00000641717 521 ntBASIC18.54■□□□□ 0.56
HMGN4O00479 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
HMGN4O00479 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
HMGN4O00479 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HMGN4O00479 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGN4O00479 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGN4O00479 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGN4O00479 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.53■□□□□ 0.56
HMGN4O00479 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.53■□□□□ 0.56
HMGN4O00479 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGN4O00479 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HMGN4O00479 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGN4O00479 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGN4O00479 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGN4O00479 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGN4O00479 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGN4O00479 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HMGN4O00479 HLA-G-202ENST00000376815 851 ntBASIC18.53■□□□□ 0.56
HMGN4O00479 HLA-G-203ENST00000376818 1127 ntBASIC18.53■□□□□ 0.56
HMGN4O00479 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.53■□□□□ 0.56
HMGN4O00479 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.53■□□□□ 0.56
HMGN4O00479 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGN4O00479 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGN4O00479 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.53■□□□□ 0.56
HMGN4O00479 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.53■□□□□ 0.56
HMGN4O00479 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGN4O00479 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HMGN4O00479 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.53■□□□□ 0.56
HMGN4O00479 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.53■□□□□ 0.56
HMGN4O00479 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.53■□□□□ 0.56
HMGN4O00479 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.53■□□□□ 0.56
HMGN4O00479 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HMGN4O00479 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.52■□□□□ 0.56
HMGN4O00479 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.52■□□□□ 0.56
HMGN4O00479 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGN4O00479 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGN4O00479 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGN4O00479 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGN4O00479 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.52■□□□□ 0.56
HMGN4O00479 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGN4O00479 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
HMGN4O00479 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGN4O00479 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.52■□□□□ 0.56
HMGN4O00479 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HMGN4O00479 CDCA4P2-201ENST00000441182 718 ntBASIC18.52■□□□□ 0.56
HMGN4O00479 AC023632.3-201ENST00000521633 145 ntBASIC18.52■□□□□ 0.56
HMGN4O00479 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.52■□□□□ 0.56
HMGN4O00479 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGN4O00479 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HMGN4O00479 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.52■□□□□ 0.56
HMGN4O00479 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HMGN4O00479 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
HMGN4O00479 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms