Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
CTDNEP1O95476 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC30.3■■■□□ 2.44
CTDNEP1O95476 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.3■■■□□ 2.44
CTDNEP1O95476 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.3■■■□□ 2.44
CTDNEP1O95476 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
CTDNEP1O95476 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CTDNEP1O95476 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CTDNEP1O95476 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC30.28■■■□□ 2.44
CTDNEP1O95476 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
CTDNEP1O95476 RPS2-209ENST00000529806 993 ntTSL 3 BASIC30.28■■■□□ 2.44
CTDNEP1O95476 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CTDNEP1O95476 NRG1-221ENST00000614767 762 ntTSL 5 BASIC30.28■■■□□ 2.44
CTDNEP1O95476 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CTDNEP1O95476 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
CTDNEP1O95476 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC30.26■■■□□ 2.44
CTDNEP1O95476 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
CTDNEP1O95476 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC30.26■■■□□ 2.43
CTDNEP1O95476 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC30.25■■■□□ 2.43
CTDNEP1O95476 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC30.25■■■□□ 2.43
CTDNEP1O95476 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC30.24■■■□□ 2.43
CTDNEP1O95476 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC30.24■■■□□ 2.43
CTDNEP1O95476 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC30.23■■■□□ 2.43
CTDNEP1O95476 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC30.23■■■□□ 2.43
CTDNEP1O95476 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC30.23■■■□□ 2.43
CTDNEP1O95476 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC30.22■■■□□ 2.43
CTDNEP1O95476 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC30.22■■■□□ 2.43
CTDNEP1O95476 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC30.22■■■□□ 2.43
CTDNEP1O95476 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
CTDNEP1O95476 DRD5P2-201ENST00000421395 2012 ntBASIC30.22■■■□□ 2.43
CTDNEP1O95476 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CTDNEP1O95476 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.21■■■□□ 2.43
CTDNEP1O95476 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CTDNEP1O95476 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC30.2■■■□□ 2.43
CTDNEP1O95476 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC30.2■■■□□ 2.43
CTDNEP1O95476 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.43
CTDNEP1O95476 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC30.2■■■□□ 2.42
CTDNEP1O95476 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC30.2■■■□□ 2.42
CTDNEP1O95476 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CTDNEP1O95476 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC30.19■■■□□ 2.42
CTDNEP1O95476 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CTDNEP1O95476 MIR6090-201ENST00000622481 60 ntBASIC30.18■■■□□ 2.42
CTDNEP1O95476 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
CTDNEP1O95476 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CTDNEP1O95476 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC30.17■■■□□ 2.42
CTDNEP1O95476 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
CTDNEP1O95476 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC30.17■■■□□ 2.42
CTDNEP1O95476 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CTDNEP1O95476 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CTDNEP1O95476 MIR3665-201ENST00000578708 105 ntBASIC30.15■■■□□ 2.42
CTDNEP1O95476 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC30.15■■■□□ 2.42
CTDNEP1O95476 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC30.15■■■□□ 2.42
CTDNEP1O95476 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC30.14■■■□□ 2.42
CTDNEP1O95476 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
CTDNEP1O95476 AL162393.1-201ENST00000437852 946 ntBASIC30.14■■■□□ 2.42
CTDNEP1O95476 AP006261.1-201ENST00000584783 668 ntBASIC30.14■■■□□ 2.42
CTDNEP1O95476 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC30.14■■■□□ 2.42
CTDNEP1O95476 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
CTDNEP1O95476 AP004833.2-201ENST00000532228 1454 ntBASIC30.13■■■□□ 2.41
CTDNEP1O95476 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC30.13■■■□□ 2.41
CTDNEP1O95476 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC30.13■■■□□ 2.41
CTDNEP1O95476 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC30.13■■■□□ 2.41
CTDNEP1O95476 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC30.12■■■□□ 2.41
CTDNEP1O95476 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC30.11■■■□□ 2.41
CTDNEP1O95476 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CTDNEP1O95476 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CTDNEP1O95476 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC30.11■■■□□ 2.41
CTDNEP1O95476 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
CTDNEP1O95476 AC142086.6-201ENST00000621154 1765 ntBASIC30.1■■■□□ 2.41
CTDNEP1O95476 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
CTDNEP1O95476 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC30.09■■■□□ 2.41
CTDNEP1O95476 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC30.09■■■□□ 2.41
CTDNEP1O95476 AC087741.3-201ENST00000624270 1347 ntBASIC30.09■■■□□ 2.41
CTDNEP1O95476 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC30.08■■■□□ 2.41
CTDNEP1O95476 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
CTDNEP1O95476 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
CTDNEP1O95476 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CTDNEP1O95476 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CTDNEP1O95476 AC108673.1-201ENST00000510422 1159 ntBASIC30.07■■■□□ 2.4
CTDNEP1O95476 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CTDNEP1O95476 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
CTDNEP1O95476 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
CTDNEP1O95476 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC30.04■■■□□ 2.4
CTDNEP1O95476 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
CTDNEP1O95476 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC30.03■■■□□ 2.4
CTDNEP1O95476 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
CTDNEP1O95476 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
CTDNEP1O95476 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC30.02■■■□□ 2.4
CTDNEP1O95476 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
CTDNEP1O95476 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC30.02■■■□□ 2.4
CTDNEP1O95476 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC30.01■■■□□ 2.39
CTDNEP1O95476 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.01■■■□□ 2.39
CTDNEP1O95476 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
CTDNEP1O95476 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
CTDNEP1O95476 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC30■■■□□ 2.39
CTDNEP1O95476 AC100797.4-201ENST00000631653 1827 ntBASIC29.99■■■□□ 2.39
CTDNEP1O95476 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC29.99■■■□□ 2.39
CTDNEP1O95476 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC29.98■■■□□ 2.39
CTDNEP1O95476 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC29.98■■■□□ 2.39
CTDNEP1O95476 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC29.98■■■□□ 2.39
CTDNEP1O95476 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC29.97■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms