Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 NREP-217ENST00000509025 987 ntTSL 3 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 AC096741.2-201ENST00000510225 637 ntTSL 5 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 APOBEC3AP1-201ENST00000511396 287 ntBASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 NREP-223ENST00000515855 801 ntTSL 4 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 RGS5-220ENST00000528689 566 ntTSL 5 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 AC015818.3-202ENST00000579603 283 ntTSL 5 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 AL121830.1-206ENST00000608476 1254 ntTSL 5 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 VIPR1-AS1-221ENST00000626992 602 ntTSL 5 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 AC119674.1-201ENST00000641611 1210 ntBASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 ARHGAP12-204ENST00000375250 4914 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 AC009948.3-201ENST00000603415 1798 ntBASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 FGG-201ENST00000336098 1659 ntTSL 2 BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 AC008555.1-201ENST00000561778 2757 ntBASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 ZNF816-203ENST00000357666 2697 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 SP140-205ENST00000420434 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
HDDC3Q8N4P3 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 MACROD2-203ENST00000402914 4425 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 RBM11-201ENST00000400577 1934 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 ZNF667-208ENST00000629654 3265 ntTSL 5 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AL590705.5-202ENST00000375204 3161 ntTSL 2 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 PYROXD1-201ENST00000240651 4055 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 LINC00536-201ENST00000505156 2692 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 ASAH1-227ENST00000636455 1777 ntTSL 5 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 OR4K1-201ENST00000285600 1076 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 RN7SKP107-201ENST00000364157 290 ntBASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AL162582.1-201ENST00000419196 467 ntTSL 3 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 CHCHD3P1-201ENST00000425516 676 ntBASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 LINC00570-203ENST00000437795 490 ntTSL 3 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 LINC01681-201ENST00000439184 760 ntTSL 2 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AL049651.1-201ENST00000440798 719 ntTSL 5 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AC099670.1-201ENST00000455141 783 ntBASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 RPL23AP8-201ENST00000479812 475 ntBASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 RN7SL797P-201ENST00000486314 297 ntBASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AC066616.1-201ENST00000486795 413 ntBASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AC098487.1-203ENST00000512915 546 ntTSL 5 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 IGLVVII-41-1-201ENST00000518405 151 ntBASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 CASC11-203ENST00000519071 791 ntTSL 3 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 PEX11A-205ENST00000561257 978 ntTSL 2 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AC011500.1-201ENST00000601963 469 ntBASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AL390877.1-201ENST00000605704 214 ntBASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AC104184.1-201ENST00000607513 721 ntBASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 PRSS3P3-201ENST00000612253 692 ntTSL 5 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 BMS1P14-201ENST00000615056 606 ntTSL 5 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AL049541.2-201ENST00000626377 555 ntBASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 TMEM14EP-202ENST00000639378 1296 ntBASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 POU2F3-201ENST00000260264 2903 ntTSL 2 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 KARSP2-201ENST00000415696 1639 ntBASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AL162171.3-201ENST00000617439 3178 ntBASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 ERBIN-205ENST00000416865 2351 ntTSL 2 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AL359396.1-201ENST00000623151 2376 ntBASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 ADH4-212ENST00000629236 1974 ntTSL 5 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 BRINP3-201ENST00000367462 3142 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 ZNF718-201ENST00000510175 3495 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 GUCY2C-201ENST00000261170 3844 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 TMX2-202ENST00000378312 1521 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 PSG2-202ENST00000406487 1538 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 AC002384.1-203ENST00000602761 3049 ntTSL 3 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 ZC3H8-202ENST00000409573 5965 ntAPPRIS P2 TSL 5 BASIC7.11□□□□□ -1.27
HDDC3Q8N4P3 LINC00269-201ENST00000399711 2173 ntTSL 2 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 MUM1L1-201ENST00000337685 4308 ntAPPRIS P1 TSL 3 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 NPIPB9-202ENST00000550983 2123 ntAPPRIS P2 TSL 1 (best) BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 FAM122C-201ENST00000370784 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 SAMMSON-222ENST00000641901 2727 ntBASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 FAR2P1-201ENST00000325390 3679 ntTSL 5 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 LDHA-206ENST00000430553 1310 ntTSL 2 BASIC7.1□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms