Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC136624.3-201ENST00000571660 567 ntTSL 5 BASIC5.87□□□□□ -1.47
CDX1P47902 MIR4685-201ENST00000578185 69 ntBASIC5.87□□□□□ -1.47
CDX1P47902 AC008734.1-201ENST00000594006 537 ntTSL 2 BASIC5.87□□□□□ -1.47
CDX1P47902 CUX2P1-201ENST00000606426 298 ntBASIC5.87□□□□□ -1.47
CDX1P47902 MIR6731-201ENST00000614863 72 ntBASIC5.87□□□□□ -1.47
CDX1P47902 AC021422.1-201ENST00000621212 473 ntBASIC5.87□□□□□ -1.47
CDX1P47902 METAP1-212ENST00000625963 147 ntTSL 5 BASIC5.87□□□□□ -1.47
CDX1P47902 PFKM-232ENST00000629846 381 ntTSL 4 BASIC5.87□□□□□ -1.47
CDX1P47902 SAMMSON-210ENST00000641260 1308 ntBASIC5.87□□□□□ -1.47
CDX1P47902 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 ANGPT1-206ENST00000520734 1526 ntTSL 2 BASIC5.87□□□□□ -1.47
CDX1P47902 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC5.87□□□□□ -1.47
CDX1P47902 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC5.87□□□□□ -1.47
CDX1P47902 CXCR4-202ENST00000409817 1895 ntAPPRIS P3 BASIC5.87□□□□□ -1.47
CDX1P47902 ZNF107-206ENST00000620827 5685 ntAPPRIS P4 TSL 4 BASIC5.87□□□□□ -1.47
CDX1P47902 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC5.87□□□□□ -1.47
CDX1P47902 TMCC1P1-201ENST00000518897 1980 ntBASIC5.87□□□□□ -1.47
CDX1P47902 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC5.87□□□□□ -1.47
CDX1P47902 FOLH1B-202ENST00000529567 2145 ntBASIC5.87□□□□□ -1.47
CDX1P47902 ATP10D-203ENST00000504445 2550 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC5.87□□□□□ -1.47
CDX1P47902 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 LCOR-201ENST00000286067 4542 ntBASIC5.87□□□□□ -1.47
CDX1P47902 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC5.87□□□□□ -1.47
CDX1P47902 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CDX1P47902 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CDX1P47902 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CDX1P47902 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CDX1P47902 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CDX1P47902 RAD54B-202ENST00000336148 3068 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CDX1P47902 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC5.86□□□□□ -1.47
CDX1P47902 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
CDX1P47902 AC087045.3-201ENST00000623046 2468 ntBASIC5.86□□□□□ -1.47
CDX1P47902 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC5.86□□□□□ -1.47
CDX1P47902 LINC01616-201ENST00000561816 2280 ntBASIC5.86□□□□□ -1.47
CDX1P47902 CDY1-202ENST00000361963 2177 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
CDX1P47902 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CDX1P47902 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC5.86□□□□□ -1.47
CDX1P47902 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
CDX1P47902 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CDX1P47902 CWC15-201ENST00000279839 1576 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CDX1P47902 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC5.86□□□□□ -1.47
CDX1P47902 KYNUP1-201ENST00000466683 1406 ntBASIC5.86□□□□□ -1.47
CDX1P47902 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CDX1P47902 TBC1D19-205ENST00000511789 1386 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CDX1P47902 IL17F-201ENST00000336123 850 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CDX1P47902 CEP41-203ENST00000343969 1087 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CDX1P47902 OR2W4P-201ENST00000406496 926 ntBASIC5.86□□□□□ -1.47
CDX1P47902 RPSAP44-201ENST00000406712 884 ntBASIC5.86□□□□□ -1.47
CDX1P47902 SNORA2C-201ENST00000408564 137 ntBASIC5.86□□□□□ -1.47
CDX1P47902 FCHSD2-202ENST00000409263 932 ntTSL 5 BASIC5.86□□□□□ -1.47
CDX1P47902 AL583805.2-201ENST00000418571 486 ntTSL 5 BASIC5.86□□□□□ -1.47
CDX1P47902 SNX18P14-201ENST00000429308 574 ntBASIC5.86□□□□□ -1.47
CDX1P47902 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC5.86□□□□□ -1.47
CDX1P47902 AL929410.2-201ENST00000451170 189 ntBASIC5.86□□□□□ -1.47
CDX1P47902 BZW1P1-201ENST00000454901 1240 ntBASIC5.86□□□□□ -1.47
CDX1P47902 AC002075.1-201ENST00000457396 676 ntBASIC5.86□□□□□ -1.47
CDX1P47902 TAAR3P-201ENST00000466706 1078 ntBASIC5.86□□□□□ -1.47
CDX1P47902 TAAR3P-202ENST00000481759 1025 ntBASIC5.86□□□□□ -1.47
CDX1P47902 AC111000.1-201ENST00000514545 713 ntBASIC5.86□□□□□ -1.47
CDX1P47902 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC5.86□□□□□ -1.47
CDX1P47902 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC5.86□□□□□ -1.47
CDX1P47902 SNX18P27-201ENST00000523611 779 ntBASIC5.86□□□□□ -1.47
CDX1P47902 AP001922.2-201ENST00000530435 390 ntTSL 3 BASIC5.86□□□□□ -1.47
CDX1P47902 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC5.86□□□□□ -1.47
CDX1P47902 AC084880.4-201ENST00000538405 577 ntTSL 2 BASIC5.86□□□□□ -1.47
CDX1P47902 AC011611.6-201ENST00000547483 255 ntBASIC5.86□□□□□ -1.47
CDX1P47902 AL118558.1-201ENST00000557551 566 ntTSL 3 BASIC5.86□□□□□ -1.47
CDX1P47902 TTN-AS1-215ENST00000585451 949 ntTSL 5 BASIC5.86□□□□□ -1.47
CDX1P47902 METTL23-207ENST00000588783 1184 ntTSL 5 BASIC5.86□□□□□ -1.47
CDX1P47902 AC008385.1-201ENST00000604421 355 ntBASIC5.86□□□□□ -1.47
CDX1P47902 AC004852.1-201ENST00000605206 154 ntBASIC5.86□□□□□ -1.47
CDX1P47902 AL391425.1-201ENST00000613658 807 ntTSL 5 BASIC5.86□□□□□ -1.47
CDX1P47902 MIAT_exon1.1-201ENST00000617016 135 ntBASIC5.86□□□□□ -1.47
CDX1P47902 BX005040.2-201ENST00000620504 370 ntBASIC5.86□□□□□ -1.47
CDX1P47902 CR392039.3-201ENST00000623236 227 ntTSL 5 BASIC5.86□□□□□ -1.47
CDX1P47902 AC012254.5-201ENST00000623573 478 ntBASIC5.86□□□□□ -1.47
CDX1P47902 AC129908.1-201ENST00000624553 648 ntBASIC5.86□□□□□ -1.47
CDX1P47902 AL353747.4-202ENST00000625787 674 ntTSL 3 BASIC5.86□□□□□ -1.47
CDX1P47902 AC073488.8-201ENST00000631952 757 ntBASIC5.86□□□□□ -1.47
CDX1P47902 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC5.86□□□□□ -1.47
CDX1P47902 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC5.86□□□□□ -1.47
CDX1P47902 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC5.86□□□□□ -1.47
CDX1P47902 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
CDX1P47902 AKAP5-201ENST00000320636 2601 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
CDX1P47902 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
CDX1P47902 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC5.86□□□□□ -1.47
CDX1P47902 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC5.86□□□□□ -1.47
CDX1P47902 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC5.86□□□□□ -1.47
CDX1P47902 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CDX1P47902 AC022034.1-201ENST00000512867 2156 ntBASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms