Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 LINC01360-203ENST00000440762 3871 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 ZMIZ1-AS1-201ENST00000428862 2851 ntTSL 5 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 APH1B-201ENST00000261879 4189 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 OR7E25P-202ENST00000641088 5937 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 CD46-205ENST00000358170 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 NXF4-202ENST00000416098 1465 ntBASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AL354719.2-201ENST00000429530 1454 ntTSL 2 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 UNC79-206ENST00000621021 7377 ntAPPRIS P2 TSL 5 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 GPM6B-201ENST00000316715 3275 ntAPPRIS ALT1 TSL 2 BASIC8.76□□□□□ -1.01
TRAIPQ9BWF2 ZCCHC11-201ENST00000257177 5743 ntAPPRIS P4 TSL 1 (best) BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 NMD3-201ENST00000351193 3049 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 ADAM20P1-202ENST00000556964 3034 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 MAPK10-298ENST00000641297 3040 ntAPPRIS P2 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 TAAR8-201ENST00000275200 1029 ntAPPRIS P1 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 RNA5SP149-201ENST00000364952 92 ntBASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 NQO1-202ENST00000379046 1105 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 RNY3P9-201ENST00000384727 106 ntBASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 RBBP4P4-201ENST00000398588 1289 ntBASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 AL590806.1-201ENST00000415818 853 ntBASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 CHCHD4P5-201ENST00000436684 427 ntBASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 YWHAZP2-201ENST00000440317 728 ntBASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 AL137027.1-201ENST00000440358 444 ntTSL 2 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 AC091730.1-201ENST00000440455 692 ntTSL 3 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 CCNB1IP1P3-201ENST00000454702 829 ntBASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 RPS2P25-201ENST00000467247 580 ntBASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 AC079203.1-201ENST00000487972 404 ntBASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 RPL7AP26-201ENST00000488538 813 ntBASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 LINC02121-201ENST00000507950 432 ntTSL 2 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 RNU6-1308P-201ENST00000516817 103 ntBASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 MS4A12-205ENST00000537076 1019 ntTSL 5 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 AC116348.1-201ENST00000562525 528 ntTSL 3 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 AC133565.1-201ENST00000569218 488 ntTSL 3 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 SKA2-203ENST00000578105 689 ntTSL 2 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 Metazoa_SRP.123-201ENST00000616695 286 ntBASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 AC010435.1-201ENST00000623353 1177 ntBASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 PCBP1-AS1-322ENST00000628147 553 ntTSL 5 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 AC022167.5-202ENST00000637237 701 ntAPPRIS P1 TSL 5 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 SIPA1L1-211ENST00000555818 7831 ntAPPRIS P3 TSL 1 (best) BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 CREM-212ENST00000374728 1933 ntTSL 5 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 ZNF337-201ENST00000252979 3205 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 HDAC9-212ENST00000432645 3099 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 CU633906.2-201ENST00000624576 2257 ntTSL 5 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 MYO6-208ENST00000627432 4074 ntTSL 5 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 AC060780.1-202ENST00000590740 5084 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 OVAAL-201ENST00000442621 1489 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 WASF4P-201ENST00000444248 1494 ntBASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 AMZ2-205ENST00000577866 1492 ntAPPRIS P1 TSL 5 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 TMCC1-203ENST00000432054 5631 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 LINC01358-211ENST00000635571 1687 ntTSL 5 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 LAMP2-202ENST00000371335 4030 ntAPPRIS ALT2 TSL 1 (best) BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 TLN2-209ENST00000561311 11880 ntAPPRIS P1 TSL 5 BASIC8.75□□□□□ -1.01
TRAIPQ9BWF2 CHD7-203ENST00000525508 4777 ntTSL 5 BASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 HIPK1-208ENST00000426820 4112 ntAPPRIS P1 TSL 2 BASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 RUNX1T1-249ENST00000613886 7401 ntAPPRIS ALT1 TSL 5 BASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 DDX24-205ENST00000555054 2769 ntTSL 5 BASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 COX7C-203ENST00000509578 1584 ntAPPRIS P2 TSL 1 (best) BASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 ZNF200-203ENST00000396871 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 LIPG-201ENST00000261292 10441 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 CAST-236ENST00000511782 2466 ntAPPRIS ALT2 TSL 2 BASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 TRIM49-202ENST00000532501 1437 ntAPPRIS ALT2 TSL 5 BASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 DDX24-209ENST00000621632 5612 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 RPL34-201ENST00000394665 529 ntAPPRIS P1 TSL 2 BASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 AC109638.1-201ENST00000417406 326 ntBASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 EIF4A1P10-201ENST00000428832 1216 ntBASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 AP001628.1-201ENST00000431150 285 ntTSL 5 BASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 LINC01747-201ENST00000437696 1067 ntTSL 2 BASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 Z77249.1-201ENST00000444622 1175 ntBASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 CCNJP1-201ENST00000450600 1149 ntBASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 RN7SL91P-201ENST00000469313 291 ntBASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 RPS27AP16-201ENST00000492222 470 ntBASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 AC005351.1-201ENST00000511152 786 ntBASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 RNU6-1028P-201ENST00000517164 93 ntBASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 IGHV3-63-201ENST00000518422 341 ntBASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 OR4A11P-201ENST00000529557 906 ntBASIC8.74□□□□□ -1.01
TRAIPQ9BWF2 DUXAP5-201ENST00000529668 529 ntBASIC8.74□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms