Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 IQUB-201ENST00000324698 2891 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
TRAIPQ9BWF2 UBQLNL-201ENST00000380184 2313 ntAPPRIS P1 BASIC8.79□□□□□ -1
TRAIPQ9BWF2 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 AP4S1-204ENST00000542754 4243 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
TRAIPQ9BWF2 MYO1A-203ENST00000442789 3658 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
TRAIPQ9BWF2 IFI44-201ENST00000370747 1687 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
TRAIPQ9BWF2 PRICKLE2-AS3-201ENST00000473434 2496 ntTSL 2 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 AC027279.1-201ENST00000568885 4284 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 ZNF415-214ENST00000597748 2461 ntTSL 5 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
TRAIPQ9BWF2 LDB2-203ENST00000502640 2626 ntTSL 1 (best) BASIC8.78□□□□□ -1
TRAIPQ9BWF2 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 OR4N4-201ENST00000328795 1126 ntAPPRIS P1 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 AMTN-201ENST00000339336 1037 ntAPPRIS P3 TSL 1 (best) BASIC8.78□□□□□ -1
TRAIPQ9BWF2 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC8.78□□□□□ -1
TRAIPQ9BWF2 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC8.78□□□□□ -1
TRAIPQ9BWF2 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 IGHV4-34-201ENST00000390616 400 ntAPPRIS P1 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 ZNF816-ZNF321P-201ENST00000391777 1252 ntAPPRIS P1 TSL 2 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 PHBP1-201ENST00000392260 808 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 AAMDC-202ENST00000393427 531 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
TRAIPQ9BWF2 GAPDHP15-201ENST00000398586 975 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 HNRNPCP2-201ENST00000399515 881 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 RN7SKP26-201ENST00000410247 293 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 AL031848.1-201ENST00000419034 351 ntTSL 5 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 AL713965.1-201ENST00000421166 230 ntTSL 5 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 FO393419.3-201ENST00000428741 282 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 CELF2-AS2-202ENST00000432370 1227 ntTSL 5 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 MTCYBP31-201ENST00000438855 1122 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 AC015983.1-201ENST00000441577 373 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 RBM22P5-201ENST00000449536 1277 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 AL590004.3-201ENST00000450255 443 ntTSL 5 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 RPL7L1P3-201ENST00000455249 689 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 AC019084.1-201ENST00000457337 432 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 CREM-220ENST00000463314 964 ntTSL 2 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 AC093719.1-201ENST00000480427 441 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 RN7SL445P-201ENST00000495609 293 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 AL449212.1-201ENST00000499853 517 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 AC025459.1-201ENST00000504072 156 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 AC091982.1-201ENST00000518134 520 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 MAL2-205ENST00000521048 575 ntTSL 4 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 AC091096.1-201ENST00000521955 614 ntTSL 3 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 LINC02365-203ENST00000522554 802 ntTSL 2 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 HMGB1P1-201ENST00000522557 636 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 AC109635.6-201ENST00000525487 1113 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 LINC00678-202ENST00000534757 798 ntTSL 3 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 CRADD-210ENST00000552033 622 ntTSL 3 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 MIR4789-201ENST00000577469 82 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 AC012254.4-201ENST00000588843 273 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 RIT2-202ENST00000589109 1156 ntTSL 1 (best) BASIC8.78□□□□□ -1
TRAIPQ9BWF2 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 AC113368.1-201ENST00000603736 382 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 CGA-202ENST00000610310 615 ntTSL 3 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 RN7SL82P-201ENST00000611435 237 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 RBM22P4-201ENST00000613117 1240 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 RN7SL628P-201ENST00000619139 237 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 AC135068.3-201ENST00000623441 1125 ntAPPRIS P1 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 SLC8A1-AS1-228ENST00000627210 225 ntTSL 5 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 PICALM-201ENST00000356360 1958 ntTSL 5 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 EFCAB7-201ENST00000371088 2313 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
TRAIPQ9BWF2 MRPL22-201ENST00000265229 3035 ntTSL 1 (best) BASIC8.78□□□□□ -1
TRAIPQ9BWF2 CHODL-203ENST00000400127 2239 ntTSL 1 (best) BASIC8.78□□□□□ -1
TRAIPQ9BWF2 OSGEPL1-204ENST00000519810 2216 ntTSL 2 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 TMEM217-201ENST00000336655 1546 ntAPPRIS P3 TSL 2 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC8.78□□□□□ -1
TRAIPQ9BWF2 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 AC009948.3-201ENST00000603415 1798 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC8.78□□□□□ -1
TRAIPQ9BWF2 MAPK10-285ENST00000641207 2746 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 AL133279.3-201ENST00000563140 2352 ntBASIC8.78□□□□□ -1
TRAIPQ9BWF2 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC8.78□□□□□ -1
TRAIPQ9BWF2 AC006213.1-202ENST00000589021 2176 ntTSL 2 BASIC8.78□□□□□ -1
TRAIPQ9BWF2 ABCA6-201ENST00000284425 5300 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
TRAIPQ9BWF2 ABLIM3-202ENST00000326685 4164 ntTSL 5 BASIC8.77□□□□□ -1
TRAIPQ9BWF2 TP63-203ENST00000354600 4668 ntAPPRIS P2 TSL 1 (best) BASIC8.77□□□□□ -1
TRAIPQ9BWF2 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC8.77□□□□□ -1
TRAIPQ9BWF2 GRIN2A-202ENST00000396573 14450 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 C2CD5-218ENST00000545552 3471 ntTSL 2 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 CLRN1-202ENST00000327047 2359 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 DNAJC5G-203ENST00000404433 1647 ntAPPRIS P1 TSL 5 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 DCLRE1C-211ENST00000396817 2761 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 AC107884.1-207ENST00000504206 4433 ntTSL 3 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 ASPH-209ENST00000517903 2658 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 OR6N2-201ENST00000339258 954 ntAPPRIS P1 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 FIG4-202ENST00000368941 791 ntTSL 3 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 RNU6-906P-201ENST00000384700 70 ntBASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 MSRB1P1-201ENST00000396851 354 ntBASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 AC233289.1-201ENST00000403700 508 ntBASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 SLC4A1APP1-201ENST00000419995 602 ntBASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 AL445218.1-202ENST00000427695 845 ntTSL 3 BASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 ETF1P3-201ENST00000430422 1160 ntBASIC8.77□□□□□ -1.01
TRAIPQ9BWF2 PRPS1P2-201ENST00000430496 937 ntBASIC8.77□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms