Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
CUX1P39880 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC11.47□□□□□ -0.57
CUX1P39880 LRRC37A15P-201ENST00000514785 1355 ntBASIC11.47□□□□□ -0.57
CUX1P39880 CAST-234ENST00000511049 3273 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
CUX1P39880 NXPE3-203ENST00000477909 3450 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CUX1P39880 STAU1-210ENST00000614381 3054 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
CUX1P39880 KIAA1958-201ENST00000337530 11775 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CUX1P39880 SCD-201ENST00000370355 5362 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CUX1P39880 KIZ-AS1-203ENST00000616177 5370 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CUX1P39880 PCBD2-204ENST00000512783 5621 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CUX1P39880 RN7SKP62-201ENST00000384539 329 ntBASIC11.47□□□□□ -0.57
CUX1P39880 AC007091.1-201ENST00000412563 566 ntTSL 5 BASIC11.47□□□□□ -0.57
CUX1P39880 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC11.47□□□□□ -0.57
CUX1P39880 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC11.47□□□□□ -0.57
CUX1P39880 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC11.47□□□□□ -0.57
CUX1P39880 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC11.47□□□□□ -0.57
CUX1P39880 SCG5-207ENST00000497208 949 ntTSL 5 BASIC11.47□□□□□ -0.57
CUX1P39880 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC11.47□□□□□ -0.57
CUX1P39880 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC11.47□□□□□ -0.57
CUX1P39880 UBTFL11-201ENST00000428234 2252 ntBASIC11.47□□□□□ -0.57
CUX1P39880 PSMD6-AS2-201ENST00000472046 2456 ntTSL 2 BASIC11.47□□□□□ -0.57
CUX1P39880 SETBP1-201ENST00000282030 9899 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
CUX1P39880 ZNF107-204ENST00000423627 5773 ntTSL 5 BASIC11.47□□□□□ -0.57
CUX1P39880 MS4A7-202ENST00000358246 2871 ntTSL 3 BASIC11.47□□□□□ -0.57
CUX1P39880 PCDH9-202ENST00000377865 5709 ntAPPRIS P4 TSL 1 (best) BASIC11.47□□□□□ -0.57
CUX1P39880 CTC1-201ENST00000315684 7021 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CUX1P39880 WDR87-201ENST00000303868 8847 ntAPPRIS P3 TSL 2 BASIC11.47□□□□□ -0.57
CUX1P39880 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CUX1P39880 FBXL20-201ENST00000264658 10388 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CUX1P39880 FAM217B-201ENST00000358293 5152 ntAPPRIS P2 TSL 2 BASIC11.47□□□□□ -0.57
CUX1P39880 UBR1-202ENST00000546274 3332 ntTSL 2 BASIC11.46□□□□□ -0.57
CUX1P39880 BDNF-209ENST00000420794 4176 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CUX1P39880 COL6A5-201ENST00000265379 9214 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
CUX1P39880 SLMAP-203ENST00000383718 6749 ntTSL 2 BASIC11.46□□□□□ -0.57
CUX1P39880 TANC2-201ENST00000389520 6404 ntTSL 5 BASIC11.46□□□□□ -0.57
CUX1P39880 FANCM-202ENST00000542564 6167 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CUX1P39880 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CUX1P39880 CFAP61-203ENST00000377293 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
CUX1P39880 AC003045.1-201ENST00000398779 713 ntBASIC11.46□□□□□ -0.57
CUX1P39880 AL355375.1-201ENST00000405686 392 ntBASIC11.46□□□□□ -0.57
CUX1P39880 VN1R20P-201ENST00000425215 966 ntBASIC11.46□□□□□ -0.57
CUX1P39880 AC005017.1-201ENST00000482002 490 ntBASIC11.46□□□□□ -0.57
CUX1P39880 AL390198.2-201ENST00000510553 222 ntBASIC11.46□□□□□ -0.57
CUX1P39880 AL845552.1-201ENST00000556820 323 ntBASIC11.46□□□□□ -0.57
CUX1P39880 AC005899.3-201ENST00000580360 271 ntTSL 3 BASIC11.46□□□□□ -0.57
CUX1P39880 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC11.46□□□□□ -0.57
CUX1P39880 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CUX1P39880 AC018692.2-201ENST00000624130 348 ntBASIC11.46□□□□□ -0.57
CUX1P39880 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC11.46□□□□□ -0.57
CUX1P39880 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC11.46□□□□□ -0.57
CUX1P39880 MAMDC2-AS1-202ENST00000414515 2097 ntTSL 5 BASIC11.46□□□□□ -0.57
CUX1P39880 CCDC150-201ENST00000389175 3685 ntAPPRIS P2 TSL 5 BASIC11.46□□□□□ -0.57
CUX1P39880 SLC8A3-208ENST00000533541 3409 ntTSL 2 BASIC11.46□□□□□ -0.57
CUX1P39880 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.58
CUX1P39880 MET-204ENST00000436117 2295 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
CUX1P39880 HNRNPU-219ENST00000639628 4546 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
CUX1P39880 ANGPT2-204ENST00000629816 2602 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.58
CUX1P39880 AC096992.2-201ENST00000609553 1684 ntBASIC11.46□□□□□ -0.58
CUX1P39880 CHN2-208ENST00000412711 2991 ntTSL 2 BASIC11.46□□□□□ -0.58
CUX1P39880 SEMA5A-201ENST00000382496 11762 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CUX1P39880 DEFA6-201ENST00000297436 469 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CUX1P39880 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC11.45□□□□□ -0.58
CUX1P39880 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
CUX1P39880 AC083862.1-201ENST00000427378 1242 ntBASIC11.45□□□□□ -0.58
CUX1P39880 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
CUX1P39880 AL645939.3-201ENST00000435408 225 ntBASIC11.45□□□□□ -0.58
CUX1P39880 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC11.45□□□□□ -0.58
CUX1P39880 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC11.45□□□□□ -0.58
CUX1P39880 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC11.45□□□□□ -0.58
CUX1P39880 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC11.45□□□□□ -0.58
CUX1P39880 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC11.45□□□□□ -0.58
CUX1P39880 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC11.45□□□□□ -0.58
CUX1P39880 MIR3135A-201ENST00000578460 77 ntBASIC11.45□□□□□ -0.58
CUX1P39880 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC11.45□□□□□ -0.58
CUX1P39880 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC11.45□□□□□ -0.58
CUX1P39880 SESTD1-203ENST00000428443 10615 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CUX1P39880 TMC5-208ENST00000564959 2434 ntTSL 2 BASIC11.45□□□□□ -0.58
CUX1P39880 WBP1L-201ENST00000369889 4107 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
CUX1P39880 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
CUX1P39880 ATP2C1-208ENST00000504948 4714 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
CUX1P39880 AC020658.2-201ENST00000559030 4020 ntBASIC11.45□□□□□ -0.58
CUX1P39880 ERG-210ENST00000442448 5034 ntTSL 5 BASIC11.45□□□□□ -0.58
CUX1P39880 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CUX1P39880 AC005614.1-201ENST00000598952 3653 ntBASIC11.45□□□□□ -0.58
CUX1P39880 WDR89-202ENST00000394942 2993 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
CUX1P39880 AC124045.1-201ENST00000606008 1953 ntBASIC11.45□□□□□ -0.58
CUX1P39880 MYO6-208ENST00000627432 4074 ntTSL 5 BASIC11.45□□□□□ -0.58
CUX1P39880 TMSB15B-208ENST00000620307 2286 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
CUX1P39880 TFDP2-224ENST00000499676 9335 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
CUX1P39880 AC004672.1-201ENST00000513082 2088 ntTSL 5 BASIC11.45□□□□□ -0.58
CUX1P39880 ATXN7L1-202ENST00000419735 5417 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CUX1P39880 PSMA6P1-201ENST00000400275 741 ntBASIC11.45□□□□□ -0.58
CUX1P39880 RN7SKP108-201ENST00000411367 328 ntBASIC11.45□□□□□ -0.58
CUX1P39880 AL360013.1-201ENST00000419031 858 ntBASIC11.45□□□□□ -0.58
CUX1P39880 AL445218.1-202ENST00000427695 845 ntTSL 3 BASIC11.45□□□□□ -0.58
CUX1P39880 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC11.45□□□□□ -0.58
CUX1P39880 OR2AF1P-201ENST00000454899 889 ntBASIC11.45□□□□□ -0.58
CUX1P39880 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC11.45□□□□□ -0.58
CUX1P39880 AC094085.1-201ENST00000468914 584 ntBASIC11.45□□□□□ -0.58
CUX1P39880 CREM-242ENST00000490511 469 ntTSL 2 BASIC11.45□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms