Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC8□□□□□ -1.13
MSX1P28360 IFNA22P-201ENST00000458710 570 ntBASIC8□□□□□ -1.13
MSX1P28360 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC8□□□□□ -1.13
MSX1P28360 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC8□□□□□ -1.13
MSX1P28360 RN7SL685P-201ENST00000476271 298 ntBASIC8□□□□□ -1.13
MSX1P28360 TUBB3P2-201ENST00000480063 232 ntBASIC8□□□□□ -1.13
MSX1P28360 RN7SL472P-201ENST00000492799 293 ntBASIC8□□□□□ -1.13
MSX1P28360 RN7SKP244-201ENST00000516513 307 ntBASIC8□□□□□ -1.13
MSX1P28360 AC011676.1-201ENST00000517658 397 ntTSL 3 BASIC8□□□□□ -1.13
MSX1P28360 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC8□□□□□ -1.13
MSX1P28360 OR4A9P-201ENST00000526326 944 ntBASIC8□□□□□ -1.13
MSX1P28360 SCAND2P-204ENST00000541103 669 ntBASIC8□□□□□ -1.13
MSX1P28360 RAN-211ENST00000541679 572 ntTSL 5 BASIC8□□□□□ -1.13
MSX1P28360 FOXG1-AS1-201ENST00000546560 538 ntTSL 3 BASIC8□□□□□ -1.13
MSX1P28360 NUPL2-212ENST00000548367 249 ntTSL 5 BASIC8□□□□□ -1.13
MSX1P28360 AC079363.1-201ENST00000551366 1125 ntBASIC8□□□□□ -1.13
MSX1P28360 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC8□□□□□ -1.13
MSX1P28360 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC8□□□□□ -1.13
MSX1P28360 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC8□□□□□ -1.13
MSX1P28360 ZSCAN26-203ENST00000611552 1030 ntTSL 2 BASIC8□□□□□ -1.13
MSX1P28360 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
MSX1P28360 AC112204.3-201ENST00000623822 332 ntBASIC8□□□□□ -1.13
MSX1P28360 AC012100.3-201ENST00000624738 575 ntBASIC8□□□□□ -1.13
MSX1P28360 MYCBP2-201ENST00000357337 14736 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
MSX1P28360 AL354685.2-201ENST00000448218 1447 ntBASIC8□□□□□ -1.13
MSX1P28360 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC8□□□□□ -1.13
MSX1P28360 KAT6A-203ENST00000406337 9241 ntAPPRIS P3 TSL 5 BASIC8□□□□□ -1.13
MSX1P28360 LINC00210-201ENST00000431637 1584 ntTSL 1 (best) BASIC8□□□□□ -1.13
MSX1P28360 ZC3H15-201ENST00000337859 2138 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
MSX1P28360 BRPF1-206ENST00000457855 4308 ntAPPRIS P3 TSL 2 BASIC8□□□□□ -1.13
MSX1P28360 ROBO2-201ENST00000332191 5437 ntAPPRIS ALT2 TSL 5 BASIC8□□□□□ -1.13
MSX1P28360 PTK2B-205ENST00000420218 3941 ntTSL 5 BASIC8□□□□□ -1.13
MSX1P28360 LINC00607-205ENST00000445174 3690 ntTSL 2 BASIC8□□□□□ -1.13
MSX1P28360 DPH3-204ENST00000488423 3131 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
MSX1P28360 RASGEF1B-203ENST00000436139 6323 ntTSL 1 (best) BASIC8□□□□□ -1.13
MSX1P28360 CCT5P1-201ENST00000502314 1618 ntBASIC8□□□□□ -1.13
MSX1P28360 IL24-207ENST00000611909 1621 ntTSL 3 BASIC8□□□□□ -1.13
MSX1P28360 RAP2C-205ENST00000620646 3341 ntTSL 5 BASIC8□□□□□ -1.13
MSX1P28360 KIAA1328-207ENST00000591619 5881 ntTSL 1 (best) BASIC8□□□□□ -1.13
MSX1P28360 PRRG1-208ENST00000542554 4600 ntAPPRIS P1 TSL 4 BASIC7.99□□□□□ -1.13
MSX1P28360 GALNT15-206ENST00000617544 2775 ntTSL 5 BASIC7.99□□□□□ -1.13
MSX1P28360 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
MSX1P28360 XRCC6P4-201ENST00000518193 2067 ntBASIC7.99□□□□□ -1.13
MSX1P28360 AC116456.2-201ENST00000623018 2209 ntBASIC7.99□□□□□ -1.13
MSX1P28360 GPN1-202ENST00000407583 1395 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
MSX1P28360 STXBP5L-206ENST00000492541 3114 ntTSL 5 BASIC7.99□□□□□ -1.13
MSX1P28360 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC7.99□□□□□ -1.13
MSX1P28360 ARMCX5-GPRASP2-206ENST00000476910 1848 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
MSX1P28360 SWT1-202ENST00000367501 3001 ntAPPRIS P1 TSL 2 BASIC7.99□□□□□ -1.13
MSX1P28360 AASS-203ENST00000417368 3163 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
MSX1P28360 SPP1-201ENST00000237623 1581 ntAPPRIS P3 TSL 1 (best) BASIC7.99□□□□□ -1.13
MSX1P28360 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC7.99□□□□□ -1.13
MSX1P28360 SERPINB13-201ENST00000269489 3206 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
MSX1P28360 RNU1-87P-201ENST00000363727 170 ntBASIC7.99□□□□□ -1.13
MSX1P28360 RN7SKP204-201ENST00000365481 310 ntBASIC7.99□□□□□ -1.13
MSX1P28360 GCG-201ENST00000375497 799 ntAPPRIS P1 TSL 5 BASIC7.99□□□□□ -1.13
MSX1P28360 SNORA75-201ENST00000384158 137 ntBASIC7.99□□□□□ -1.13
MSX1P28360 SNORA40.2-201ENST00000390847 128 ntBASIC7.99□□□□□ -1.13
MSX1P28360 FCAR-207ENST00000391725 830 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
MSX1P28360 MTCO3P31-201ENST00000405526 789 ntBASIC7.99□□□□□ -1.13
MSX1P28360 AL357084.1-201ENST00000407538 454 ntBASIC7.99□□□□□ -1.13
MSX1P28360 HSPE1-202ENST00000409468 570 ntTSL 2 BASIC7.99□□□□□ -1.13
MSX1P28360 RNU2-17P-201ENST00000410290 190 ntBASIC7.99□□□□□ -1.13
MSX1P28360 AL136380.2-201ENST00000411837 492 ntBASIC7.99□□□□□ -1.13
MSX1P28360 ZRANB2-AS2-203ENST00000415780 249 ntTSL 5 BASIC7.99□□□□□ -1.13
MSX1P28360 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC7.99□□□□□ -1.13
MSX1P28360 LINC00630-202ENST00000420471 838 ntTSL 3 BASIC7.99□□□□□ -1.13
MSX1P28360 AC023128.2-201ENST00000420880 1223 ntBASIC7.99□□□□□ -1.13
MSX1P28360 AC097721.1-201ENST00000427150 1253 ntBASIC7.99□□□□□ -1.13
MSX1P28360 AL008638.1-201ENST00000430468 473 ntTSL 2 BASIC7.99□□□□□ -1.13
MSX1P28360 MED14P1-201ENST00000430517 648 ntBASIC7.99□□□□□ -1.13
MSX1P28360 KRT18P53-201ENST00000431919 117 ntBASIC7.99□□□□□ -1.13
MSX1P28360 OR51R1P-201ENST00000435309 952 ntBASIC7.99□□□□□ -1.13
MSX1P28360 RPE-207ENST00000435437 858 ntTSL 2 BASIC7.99□□□□□ -1.13
MSX1P28360 UBQLN1P1-207ENST00000441056 1169 ntBASIC7.99□□□□□ -1.13
MSX1P28360 AL139237.1-201ENST00000446107 513 ntTSL 2 BASIC7.99□□□□□ -1.13
MSX1P28360 AC023137.1-201ENST00000448241 308 ntTSL 4 BASIC7.99□□□□□ -1.13
MSX1P28360 AL627224.1-201ENST00000448334 444 ntBASIC7.99□□□□□ -1.13
MSX1P28360 LINC00894-207ENST00000452864 750 ntTSL 5 BASIC7.99□□□□□ -1.13
MSX1P28360 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC7.99□□□□□ -1.13
MSX1P28360 AC044784.1-201ENST00000456526 677 ntTSL 3 BASIC7.99□□□□□ -1.13
MSX1P28360 GABRR3-202ENST00000472788 1416 ntAPPRIS P1 TSL 5 BASIC7.99□□□□□ -1.13
MSX1P28360 AC016546.1-201ENST00000473590 463 ntBASIC7.99□□□□□ -1.13
MSX1P28360 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC7.99□□□□□ -1.13
MSX1P28360 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC7.99□□□□□ -1.13
MSX1P28360 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC7.99□□□□□ -1.13
MSX1P28360 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC7.99□□□□□ -1.13
MSX1P28360 AC006499.4-201ENST00000510947 694 ntBASIC7.99□□□□□ -1.13
MSX1P28360 MTCYBP44-201ENST00000514835 823 ntBASIC7.99□□□□□ -1.13
MSX1P28360 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC7.99□□□□□ -1.13
MSX1P28360 IGLC5-201ENST00000519670 293 ntBASIC7.99□□□□□ -1.13
MSX1P28360 AP002004.1-206ENST00000532441 876 ntBASIC7.99□□□□□ -1.13
MSX1P28360 AC113143.1-201ENST00000534670 301 ntTSL 2 BASIC7.99□□□□□ -1.13
MSX1P28360 AC005871.2-201ENST00000549104 526 ntTSL 4 BASIC7.99□□□□□ -1.13
MSX1P28360 AL445383.1-201ENST00000554689 874 ntBASIC7.99□□□□□ -1.13
MSX1P28360 AC007375.2-201ENST00000557752 603 ntAPPRIS P1 TSL 5 BASIC7.99□□□□□ -1.13
MSX1P28360 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC7.99□□□□□ -1.13
MSX1P28360 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
MSX1P28360 AC012414.6-201ENST00000568241 401 ntBASIC7.99□□□□□ -1.13
MSX1P28360 AC012435.1-202ENST00000568772 240 ntBASIC7.99□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms