Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHGA3Q9Y5H0 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.39■□□□□ 0.69
PCDHGA3Q9Y5H0 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHGA3Q9Y5H0 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHGA3Q9Y5H0 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHGA3Q9Y5H0 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDHGA3Q9Y5H0 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDHGA3Q9Y5H0 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PCDHGA3Q9Y5H0 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
PCDHGA3Q9Y5H0 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDHGA3Q9Y5H0 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDHGA3Q9Y5H0 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.38■□□□□ 0.69
PCDHGA3Q9Y5H0 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.38■□□□□ 0.69
PCDHGA3Q9Y5H0 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
PCDHGA3Q9Y5H0 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDHGA3Q9Y5H0 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.38■□□□□ 0.69
PCDHGA3Q9Y5H0 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PCDHGA3Q9Y5H0 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.38■□□□□ 0.69
PCDHGA3Q9Y5H0 AC120498.8-201ENST00000614275 531 ntBASIC19.38■□□□□ 0.69
PCDHGA3Q9Y5H0 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
PCDHGA3Q9Y5H0 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
PCDHGA3Q9Y5H0 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA3Q9Y5H0 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA3Q9Y5H0 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA3Q9Y5H0 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA3Q9Y5H0 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA3Q9Y5H0 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA3Q9Y5H0 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
PCDHGA3Q9Y5H0 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA3Q9Y5H0 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA3Q9Y5H0 SNORA78-201ENST00000459373 127 ntBASIC19.37■□□□□ 0.69
PCDHGA3Q9Y5H0 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.37■□□□□ 0.69
PCDHGA3Q9Y5H0 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.37■□□□□ 0.69
PCDHGA3Q9Y5H0 AC233702.5-201ENST00000584107 538 ntBASIC19.37■□□□□ 0.69
PCDHGA3Q9Y5H0 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA3Q9Y5H0 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA3Q9Y5H0 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.37■□□□□ 0.69
PCDHGA3Q9Y5H0 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 AL356652.1-201ENST00000615962 565 ntBASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA3Q9Y5H0 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 AC124016.1-201ENST00000609552 612 ntBASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 LINC01006-201ENST00000333319 2292 ntBASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA3Q9Y5H0 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms