Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC30.5■■■□□ 2.47
COL17A1Q9UMD9 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC30.5■■■□□ 2.47
COL17A1Q9UMD9 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
COL17A1Q9UMD9 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC30.5■■■□□ 2.47
COL17A1Q9UMD9 EXOC3-AS1-202ENST00000623673 1663 ntBASIC30.5■■■□□ 2.47
COL17A1Q9UMD9 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC30.5■■■□□ 2.47
COL17A1Q9UMD9 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
COL17A1Q9UMD9 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC30.5■■■□□ 2.47
COL17A1Q9UMD9 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC30.5■■■□□ 2.47
COL17A1Q9UMD9 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC30.5■■■□□ 2.47
COL17A1Q9UMD9 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC30.5■■■□□ 2.47
COL17A1Q9UMD9 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC30.49■■■□□ 2.47
COL17A1Q9UMD9 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC30.49■■■□□ 2.47
COL17A1Q9UMD9 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC30.49■■■□□ 2.47
COL17A1Q9UMD9 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC30.49■■■□□ 2.47
COL17A1Q9UMD9 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL17A1Q9UMD9 HIST1H2APS4-201ENST00000362070 348 ntBASIC30.49■■■□□ 2.47
COL17A1Q9UMD9 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
COL17A1Q9UMD9 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL17A1Q9UMD9 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC30.49■■■□□ 2.47
COL17A1Q9UMD9 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC30.48■■■□□ 2.47
COL17A1Q9UMD9 ATP5G2P1-201ENST00000433580 426 ntBASIC30.48■■■□□ 2.47
COL17A1Q9UMD9 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC30.48■■■□□ 2.47
COL17A1Q9UMD9 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
COL17A1Q9UMD9 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
COL17A1Q9UMD9 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC30.48■■■□□ 2.47
COL17A1Q9UMD9 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC30.48■■■□□ 2.47
COL17A1Q9UMD9 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
COL17A1Q9UMD9 COMT-203ENST00000403184 2217 ntTSL 2 BASIC30.47■■■□□ 2.47
COL17A1Q9UMD9 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC30.47■■■□□ 2.47
COL17A1Q9UMD9 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
COL17A1Q9UMD9 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC30.47■■■□□ 2.47
COL17A1Q9UMD9 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
COL17A1Q9UMD9 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC30.47■■■□□ 2.47
COL17A1Q9UMD9 AL441883.1-201ENST00000566170 1045 ntBASIC30.47■■■□□ 2.47
COL17A1Q9UMD9 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC30.47■■■□□ 2.47
COL17A1Q9UMD9 ANKRD20A18P-201ENST00000359341 492 ntBASIC30.46■■■□□ 2.47
COL17A1Q9UMD9 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC30.46■■■□□ 2.47
COL17A1Q9UMD9 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC30.46■■■□□ 2.47
COL17A1Q9UMD9 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC30.46■■■□□ 2.47
COL17A1Q9UMD9 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC30.46■■■□□ 2.47
COL17A1Q9UMD9 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC30.46■■■□□ 2.47
COL17A1Q9UMD9 KRT8P10-201ENST00000450021 1447 ntBASIC30.46■■■□□ 2.47
COL17A1Q9UMD9 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC30.46■■■□□ 2.47
COL17A1Q9UMD9 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC30.45■■■□□ 2.47
COL17A1Q9UMD9 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
COL17A1Q9UMD9 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
COL17A1Q9UMD9 HOMER2P1-201ENST00000455653 964 ntBASIC30.45■■■□□ 2.47
COL17A1Q9UMD9 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC30.45■■■□□ 2.47
COL17A1Q9UMD9 AC083849.1-201ENST00000615227 514 ntBASIC30.45■■■□□ 2.47
COL17A1Q9UMD9 AC008622.2-201ENST00000617006 1229 ntBASIC30.45■■■□□ 2.47
COL17A1Q9UMD9 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
COL17A1Q9UMD9 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC30.45■■■□□ 2.47
COL17A1Q9UMD9 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
COL17A1Q9UMD9 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC30.45■■■□□ 2.47
COL17A1Q9UMD9 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC30.45■■■□□ 2.47
COL17A1Q9UMD9 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC30.45■■■□□ 2.47
COL17A1Q9UMD9 ME2-208ENST00000638937 2471 ntTSL 5 BASIC30.45■■■□□ 2.47
COL17A1Q9UMD9 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC30.45■■■□□ 2.46
COL17A1Q9UMD9 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
COL17A1Q9UMD9 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC30.44■■■□□ 2.46
COL17A1Q9UMD9 AC007663.1-201ENST00000438948 1240 ntBASIC30.44■■■□□ 2.46
COL17A1Q9UMD9 KRT17P6-201ENST00000453795 1220 ntBASIC30.44■■■□□ 2.46
COL17A1Q9UMD9 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC30.44■■■□□ 2.46
COL17A1Q9UMD9 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC30.44■■■□□ 2.46
COL17A1Q9UMD9 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
COL17A1Q9UMD9 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC30.44■■■□□ 2.46
COL17A1Q9UMD9 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
COL17A1Q9UMD9 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
COL17A1Q9UMD9 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC30.44■■■□□ 2.46
COL17A1Q9UMD9 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC30.44■■■□□ 2.46
COL17A1Q9UMD9 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC30.44■■■□□ 2.46
COL17A1Q9UMD9 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
COL17A1Q9UMD9 FXN-203ENST00000396366 922 ntTSL 2 BASIC30.44■■■□□ 2.46
COL17A1Q9UMD9 DAP-202ENST00000432074 1048 ntTSL 2 BASIC30.44■■■□□ 2.46
COL17A1Q9UMD9 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC30.44■■■□□ 2.46
COL17A1Q9UMD9 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC30.44■■■□□ 2.46
COL17A1Q9UMD9 NPAP1P7-201ENST00000613027 823 ntBASIC30.44■■■□□ 2.46
COL17A1Q9UMD9 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC30.44■■■□□ 2.46
COL17A1Q9UMD9 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
COL17A1Q9UMD9 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC30.43■■■□□ 2.46
COL17A1Q9UMD9 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC30.43■■■□□ 2.46
COL17A1Q9UMD9 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
COL17A1Q9UMD9 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC30.43■■■□□ 2.46
COL17A1Q9UMD9 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
COL17A1Q9UMD9 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
COL17A1Q9UMD9 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC30.43■■■□□ 2.46
COL17A1Q9UMD9 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC30.43■■■□□ 2.46
COL17A1Q9UMD9 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC30.43■■■□□ 2.46
COL17A1Q9UMD9 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC30.43■■■□□ 2.46
COL17A1Q9UMD9 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC30.43■■■□□ 2.46
COL17A1Q9UMD9 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC30.42■■■□□ 2.46
COL17A1Q9UMD9 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
COL17A1Q9UMD9 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
COL17A1Q9UMD9 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
COL17A1Q9UMD9 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
COL17A1Q9UMD9 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
COL17A1Q9UMD9 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC30.42■■■□□ 2.46
COL17A1Q9UMD9 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
COL17A1Q9UMD9 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms