Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 KRT18P20-201ENST00000548986 1279 ntBASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 AP001160.3-201ENST00000601484 763 ntBASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 RBM17P2-201ENST00000616397 1405 ntBASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 AC105265.2-201ENST00000467189 838 ntBASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 AC009237.14-201ENST00000609975 1594 ntBASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC28BQ9BUN5 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC28BQ9BUN5 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC28BQ9BUN5 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC28BQ9BUN5 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC28BQ9BUN5 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC28BQ9BUN5 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC28BQ9BUN5 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC28BQ9BUN5 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC28BQ9BUN5 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.39■□□□□ 0.69
CCDC28BQ9BUN5 AL031432.3-201ENST00000607698 485 ntBASIC19.39■□□□□ 0.69
CCDC28BQ9BUN5 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC28BQ9BUN5 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC28BQ9BUN5 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC28BQ9BUN5 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC28BQ9BUN5 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC28BQ9BUN5 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC28BQ9BUN5 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC28BQ9BUN5 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CCDC28BQ9BUN5 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CCDC28BQ9BUN5 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC28BQ9BUN5 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.39■□□□□ 0.69
CCDC28BQ9BUN5 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC28BQ9BUN5 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 AC104187.1-201ENST00000607510 612 ntBASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 MIR6084-201ENST00000622012 110 ntBASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC28BQ9BUN5 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC28BQ9BUN5 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CCDC28BQ9BUN5 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC28BQ9BUN5 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC28BQ9BUN5 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.37■□□□□ 0.69
CCDC28BQ9BUN5 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC28BQ9BUN5 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CCDC28BQ9BUN5 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms