Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
ZNF560Q96MR9 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.39■■□□□ 1.01
ZNF560Q96MR9 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
ZNF560Q96MR9 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
ZNF560Q96MR9 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
ZNF560Q96MR9 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.38■■□□□ 1.01
ZNF560Q96MR9 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZNF560Q96MR9 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC21.38■■□□□ 1.01
ZNF560Q96MR9 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
ZNF560Q96MR9 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZNF560Q96MR9 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.38■■□□□ 1.01
ZNF560Q96MR9 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.38■■□□□ 1.01
ZNF560Q96MR9 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZNF560Q96MR9 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.38■■□□□ 1.01
ZNF560Q96MR9 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.38■■□□□ 1.01
ZNF560Q96MR9 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.38■■□□□ 1.01
ZNF560Q96MR9 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.38■■□□□ 1.01
ZNF560Q96MR9 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.38■■□□□ 1.01
ZNF560Q96MR9 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZNF560Q96MR9 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.38■■□□□ 1.01
ZNF560Q96MR9 FEM1AP1-201ENST00000431297 1995 ntBASIC21.37■■□□□ 1.01
ZNF560Q96MR9 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 GABARAPL3-202ENST00000624044 1851 ntBASIC21.37■■□□□ 1.01
ZNF560Q96MR9 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF560Q96MR9 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 AL023875.1-201ENST00000640777 796 ntBASIC21.36■■□□□ 1.01
ZNF560Q96MR9 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF560Q96MR9 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
ZNF560Q96MR9 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.35■■□□□ 1.01
ZNF560Q96MR9 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZNF560Q96MR9 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
ZNF560Q96MR9 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZNF560Q96MR9 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZNF560Q96MR9 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.35■■□□□ 1.01
ZNF560Q96MR9 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
ZNF560Q96MR9 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZNF560Q96MR9 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.35■■□□□ 1.01
ZNF560Q96MR9 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
ZNF560Q96MR9 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZNF560Q96MR9 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZNF560Q96MR9 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
ZNF560Q96MR9 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ZNF560Q96MR9 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21.34■■□□□ 1.01
ZNF560Q96MR9 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
ZNF560Q96MR9 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.34■■□□□ 1.01
ZNF560Q96MR9 KRASP1-201ENST00000407852 552 ntBASIC21.34■■□□□ 1.01
ZNF560Q96MR9 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.34■■□□□ 1.01
ZNF560Q96MR9 UBE2SP1-201ENST00000450587 669 ntBASIC21.34■■□□□ 1.01
ZNF560Q96MR9 AC133681.1-201ENST00000465482 601 ntBASIC21.34■■□□□ 1.01
ZNF560Q96MR9 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
ZNF560Q96MR9 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.34■■□□□ 1.01
ZNF560Q96MR9 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms