Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.112e-7■■■■□ 23.6
UPF1Q92900 ADCY6-203ENST00000547260 4758 ntTSL 213.66□□□□□ -0.222e-7■■■■□ 23.6
UPF1Q92900 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.567e-6■■■■□ 23.6
UPF1Q92900 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.177e-6■■■■□ 23.6
UPF1Q92900 WBP2-203ENST00000433525 928 ntTSL 2 BASIC25.6■■□□□ 1.693e-17■■■■□ 23.6
UPF1Q92900 TXNL4B-204ENST00000562153 581 ntTSL 419.36■□□□□ 0.692e-8■■■■□ 23.6
UPF1Q92900 TXNL4B-201ENST00000268483 2556 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.412e-8■■■■□ 23.6
UPF1Q92900 TXNL4B-202ENST00000423037 2490 ntAPPRIS P1 TSL 4 BASIC11.38□□□□□ -0.592e-8■■■■□ 23.6
UPF1Q92900 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.071e-7■■■■□ 23.6
UPF1Q92900 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.461e-6■■■■□ 23.5
UPF1Q92900 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.451e-6■■■■□ 23.5
UPF1Q92900 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.341e-6■■■■□ 23.5
UPF1Q92900 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.291e-6■■■■□ 23.5
UPF1Q92900 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.061e-6■■■■□ 23.5
UPF1Q92900 NOMO2-206ENST00000564991 3765 ntTSL 515.44■□□□□ 0.061e-6■■■■□ 23.5
UPF1Q92900 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC7.54□□□□□ -1.24e-9■■■■□ 23.5
UPF1Q92900 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.484e-9■■■■□ 23.5
UPF1Q92900 ABCD1-201ENST00000218104 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.145e-11■■■■□ 23.5
UPF1Q92900 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.643e-10■■■■□ 23.5
UPF1Q92900 C6orf203-201ENST00000311381 900 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.573e-10■■■■□ 23.5
UPF1Q92900 C6orf203-204ENST00000625458 1146 ntTSL 3 BASIC15.45■□□□□ 0.063e-10■■■■□ 23.5
UPF1Q92900 HIRA-204ENST00000464189 560 ntTSL 416.91■□□□□ 0.33e-7■■■■□ 23.5
UPF1Q92900 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC14.4□□□□□ -0.18e-20■■■■□ 23.5
UPF1Q92900 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.062e-13■■■■□ 23.5
UPF1Q92900 SLC39A14-204ENST00000381237 4641 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.432e-13■■■■□ 23.5
UPF1Q92900 SLC39A14-203ENST00000359741 4641 ntAPPRIS P3 TSL 2 BASIC11.99□□□□□ -0.492e-13■■■■□ 23.5
UPF1Q92900 MAPKAP1-213ENST00000444226 701 ntTSL 331.12■■■□□ 2.572e-6■■■■□ 23.5
UPF1Q92900 MAPKAP1-219ENST00000496658 448 ntTSL 329.16■■■□□ 2.262e-6■■■■□ 23.5
UPF1Q92900 MAPKAP1-217ENST00000483937 1603 ntTSL 223.55■■□□□ 1.362e-6■■■■□ 23.5
UPF1Q92900 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.61■□□□□ 0.412e-6■■■■□ 23.5
UPF1Q92900 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.39■□□□□ 0.382e-6■■■■□ 23.5
UPF1Q92900 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.39■□□□□ 0.212e-6■■■■□ 23.5
UPF1Q92900 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.172e-6■■■■□ 23.5
UPF1Q92900 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.58■□□□□ 0.082e-6■■■■□ 23.5
UPF1Q92900 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.132e-6■■■■□ 23.5
UPF1Q92900 LYRM7-201ENST00000379380 6351 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.892e-11■■■■□ 23.5
UPF1Q92900 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.994e-7■■■■□ 23.5
UPF1Q92900 ERMP1-203ENST00000462592 3554 ntTSL 215.66■□□□□ 0.14e-7■■■■□ 23.5
UPF1Q92900 ERMP1-201ENST00000214893 4974 ntTSL 1 (best)10.89□□□□□ -0.674e-7■■■■□ 23.5
UPF1Q92900 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.586e-7■■■■□ 23.5
UPF1Q92900 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.526e-7■■■■□ 23.5
UPF1Q92900 ARHGEF18-203ENST00000594665 4616 ntTSL 217.67■□□□□ 0.426e-7■■■■□ 23.5
UPF1Q92900 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.46e-7■■■■□ 23.5
UPF1Q92900 PREB-204ENST00000430533 615 ntTSL 213.44□□□□□ -0.264e-13■■■■□ 23.5
UPF1Q92900 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC22.47■■□□□ 1.199e-12■■■■□ 23.5
UPF1Q92900 MAPKAPK3-204ENST00000451680 873 ntTSL 217.75■□□□□ 0.434e-11■■■■□ 23.5
UPF1Q92900 DHX35-207ENST00000493450 2958 ntTSL 211.58□□□□□ -0.552e-6■■■■□ 23.5
UPF1Q92900 DHX35-203ENST00000373325 3287 ntTSL 5 BASIC11.46□□□□□ -0.582e-6■■■■□ 23.5
UPF1Q92900 DHX35-206ENST00000484417 3318 ntTSL 210.99□□□□□ -0.652e-6■■■■□ 23.5
UPF1Q92900 DHX35-201ENST00000252011 3325 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.722e-6■■■■□ 23.5
UPF1Q92900 FAXDC2-215ENST00000524250 3105 ntTSL 210.57□□□□□ -0.729e-12■■■■□ 23.5
UPF1Q92900 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.54■□□□□ 0.244e-7■■■■□ 23.5
UPF1Q92900 COL4A3BP-202ENST00000357457 886 ntTSL 513.16□□□□□ -0.34e-7■■■■□ 23.5
UPF1Q92900 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.222e-6■■■■□ 23.5
UPF1Q92900 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.89■□□□□ 0.612e-6■■■■□ 23.5
UPF1Q92900 PFKFB3-203ENST00000379775 4483 ntTSL 1 (best) BASIC12.3□□□□□ -0.442e-6■■■■□ 23.5
UPF1Q92900 PFKFB3-205ENST00000379789 4157 ntTSL 1 (best) BASIC12.12□□□□□ -0.472e-6■■■■□ 23.5
UPF1Q92900 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC28.34■■■□□ 2.133e-12■■■■□ 23.5
UPF1Q92900 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC28■■■□□ 2.073e-12■■■■□ 23.5
UPF1Q92900 P2RX4-214ENST00000543984 1612 ntTSL 225.4■■□□□ 1.663e-12■■■■□ 23.5
UPF1Q92900 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.353e-12■■■■□ 23.5
UPF1Q92900 P2RX4-205ENST00000499638 3145 ntTSL 214.96□□□□□ -0.023e-12■■■■□ 23.5
UPF1Q92900 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.232e-6■■■■□ 23.5
UPF1Q92900 ATG4B-217ENST00000475693 2237 ntTSL 222.31■■□□□ 1.162e-8■■■■□ 23.4
UPF1Q92900 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.272e-8■■■■□ 23.4
UPF1Q92900 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.93□□□□□ -0.022e-8■■■■□ 23.4
UPF1Q92900 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC26.69■■□□□ 1.863e-10■■■■□ 23.4
UPF1Q92900 CD59-208ENST00000527577 686 ntAPPRIS P2 TSL 3 BASIC14.6□□□□□ -0.074e-7■■■■□ 23.4
UPF1Q92900 P2RX4-212ENST00000543318 1429 ntTSL 1 (best)31.04■■■□□ 2.565e-13■■■■□ 23.4
UPF1Q92900 SYNGR2-205ENST00000589183 796 ntTSL 327.16■■□□□ 1.947e-8■■■■□ 23.4
UPF1Q92900 PIGT-255ENST00000640175 1429 ntTSL 218.49■□□□□ 0.556e-25■■■■□ 23.4
UPF1Q92900 URM1-205ENST00000470840 723 ntTSL 217.75■□□□□ 0.434e-9■■■■□ 23.4
UPF1Q92900 IQSEC2-201ENST00000375365 4004 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.694e-8■■■■□ 23.4
UPF1Q92900 POLR2K-201ENST00000353107 998 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.144e-7■■■■□ 23.4
UPF1Q92900 RAB2B-201ENST00000397762 2928 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.813e-9■■■■□ 23.4
UPF1Q92900 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC31.7■■■□□ 2.669e-7■■■■□ 23.4
UPF1Q92900 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC28.69■■■□□ 2.189e-7■■■■□ 23.4
UPF1Q92900 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.019e-7■■■■□ 23.4
UPF1Q92900 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.757e-7■■■■□ 23.4
UPF1Q92900 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.194e-7■■■■□ 23.4
UPF1Q92900 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.82e-6■■■■□ 23.4
UPF1Q92900 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.05■□□□□ 0.163e-6■■■■□ 23.4
UPF1Q92900 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.23e-6■■■■□ 23.4
UPF1Q92900 GRAMD4-201ENST00000361034 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.383e-6■■■■□ 23.4
UPF1Q92900 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC23.06■■□□□ 1.284e-7■■■■□ 23.4
UPF1Q92900 SIDT2-202ENST00000324225 4406 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.674e-7■■■■□ 23.4
UPF1Q92900 SIDT2-201ENST00000278951 3135 ntTSL 510.84□□□□□ -0.674e-7■■■■□ 23.4
UPF1Q92900 SIDT2-203ENST00000431081 3910 ntTSL 1 (best) BASIC10.52□□□□□ -0.734e-7■■■■□ 23.4
UPF1Q92900 SIDT2-219ENST00000620360 3924 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.024e-7■■■■□ 23.4
UPF1Q92900 TGIF2-205ENST00000558465 785 ntTSL 311.61□□□□□ -0.552e-7■■■■□ 23.4
UPF1Q92900 TXNIP-203ENST00000488537 1509 ntTSL 59.71□□□□□ -0.864e-11■■■■□ 23.4
UPF1Q92900 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC16.71■□□□□ 0.274e-8■■■■□ 23.3
UPF1Q92900 SSC4D-202ENST00000492979 1224 ntTSL 526.88■■□□□ 1.892e-6■■■■□ 23.3
UPF1Q92900 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.432e-6■■■■□ 23.3
UPF1Q92900 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.248e-9■■■■□ 23.3
UPF1Q92900 MAN2A2-201ENST00000360468 6268 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.628e-9■■■■□ 23.3
UPF1Q92900 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.585e-10■■■■□ 23.3
UPF1Q92900 DCTD-203ENST00000500813 1829 ntTSL 222.58■■□□□ 1.215e-10■■■■□ 23.3
UPF1Q92900 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC22.15■■□□□ 1.145e-10■■■■□ 23.3
UPF1Q92900 DCTD-207ENST00000507543 1874 ntTSL 518.29■□□□□ 0.525e-10■■■■□ 23.3
Retrieved 100 of 15,879 protein–RNA pairs in 209.9 ms