Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 AC113410.3-201ENST00000623366 203 ntBASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 AC097493.4-201ENST00000641197 219 ntBASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 KRT8P20-201ENST00000423953 1409 ntBASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.1■□□□□ 0.81
HDDC3Q8N4P3 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HDDC3Q8N4P3 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HDDC3Q8N4P3 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.09■□□□□ 0.81
HDDC3Q8N4P3 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.09■□□□□ 0.81
HDDC3Q8N4P3 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.09■□□□□ 0.81
HDDC3Q8N4P3 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.09■□□□□ 0.81
HDDC3Q8N4P3 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.09■□□□□ 0.81
HDDC3Q8N4P3 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.09■□□□□ 0.81
HDDC3Q8N4P3 AL031963.3-201ENST00000606441 850 ntBASIC20.09■□□□□ 0.81
HDDC3Q8N4P3 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HDDC3Q8N4P3 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.09■□□□□ 0.81
HDDC3Q8N4P3 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.09■□□□□ 0.81
HDDC3Q8N4P3 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
HDDC3Q8N4P3 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HDDC3Q8N4P3 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HDDC3Q8N4P3 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
HDDC3Q8N4P3 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HDDC3Q8N4P3 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HDDC3Q8N4P3 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
HDDC3Q8N4P3 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.08■□□□□ 0.81
HDDC3Q8N4P3 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HDDC3Q8N4P3 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
HDDC3Q8N4P3 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HDDC3Q8N4P3 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HDDC3Q8N4P3 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.08■□□□□ 0.81
HDDC3Q8N4P3 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.08■□□□□ 0.81
HDDC3Q8N4P3 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.08■□□□□ 0.81
HDDC3Q8N4P3 RARRES2P10-201ENST00000564312 460 ntBASIC20.08■□□□□ 0.81
HDDC3Q8N4P3 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.08■□□□□ 0.81
HDDC3Q8N4P3 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.08■□□□□ 0.81
HDDC3Q8N4P3 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
HDDC3Q8N4P3 AL121906.2-201ENST00000621597 723 ntBASIC20.08■□□□□ 0.81
HDDC3Q8N4P3 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
HDDC3Q8N4P3 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.08■□□□□ 0.8
HDDC3Q8N4P3 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.08■□□□□ 0.8
HDDC3Q8N4P3 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.08■□□□□ 0.8
HDDC3Q8N4P3 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
HDDC3Q8N4P3 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.08■□□□□ 0.8
HDDC3Q8N4P3 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HDDC3Q8N4P3 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HDDC3Q8N4P3 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 RCN1P1-201ENST00000400413 996 ntBASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDDC3Q8N4P3 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 NBPF21P-201ENST00000425093 1451 ntBASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 TSPY15P-201ENST00000457163 923 ntBASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 AL355075.4-201ENST00000554988 638 ntBASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 AC005229.4-201ENST00000610085 2198 ntBASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms