Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SLC44A3Q8N4M1 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC44A3Q8N4M1 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.54■□□□□ 0.88
SLC44A3Q8N4M1 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC44A3Q8N4M1 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.54■□□□□ 0.88
SLC44A3Q8N4M1 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 AC006011.2-201ENST00000621313 1158 ntBASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 FSCN1P1-201ENST00000568912 1481 ntBASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
SLC44A3Q8N4M1 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC44A3Q8N4M1 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC44A3Q8N4M1 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC44A3Q8N4M1 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.52■□□□□ 0.88
SLC44A3Q8N4M1 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SLC44A3Q8N4M1 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC44A3Q8N4M1 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.52■□□□□ 0.88
SLC44A3Q8N4M1 MESTP1-201ENST00000404287 994 ntBASIC20.52■□□□□ 0.88
SLC44A3Q8N4M1 ATP5G1P1-201ENST00000448724 379 ntBASIC20.52■□□□□ 0.88
SLC44A3Q8N4M1 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.52■□□□□ 0.88
SLC44A3Q8N4M1 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.52■□□□□ 0.88
SLC44A3Q8N4M1 C2orf69P3-201ENST00000565542 1120 ntBASIC20.52■□□□□ 0.88
SLC44A3Q8N4M1 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.52■□□□□ 0.88
SLC44A3Q8N4M1 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SLC44A3Q8N4M1 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.52■□□□□ 0.88
SLC44A3Q8N4M1 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
SLC44A3Q8N4M1 PTBP1P-201ENST00000554374 1601 ntBASIC20.52■□□□□ 0.88
SLC44A3Q8N4M1 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SLC44A3Q8N4M1 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SLC44A3Q8N4M1 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC44A3Q8N4M1 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.51■□□□□ 0.87
SLC44A3Q8N4M1 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC44A3Q8N4M1 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC44A3Q8N4M1 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SLC44A3Q8N4M1 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.51■□□□□ 0.87
SLC44A3Q8N4M1 ECEL1P2-202ENST00000465689 757 ntBASIC20.51■□□□□ 0.87
SLC44A3Q8N4M1 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
SLC44A3Q8N4M1 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.51■□□□□ 0.87
SLC44A3Q8N4M1 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.51■□□□□ 0.87
SLC44A3Q8N4M1 EGLN1P1-201ENST00000531623 762 ntBASIC20.51■□□□□ 0.87
SLC44A3Q8N4M1 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SLC44A3Q8N4M1 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC44A3Q8N4M1 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SLC44A3Q8N4M1 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC44A3Q8N4M1 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC44A3Q8N4M1 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SLC44A3Q8N4M1 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC44A3Q8N4M1 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC44A3Q8N4M1 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC44A3Q8N4M1 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC44A3Q8N4M1 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC44A3Q8N4M1 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.49■□□□□ 0.87
SLC44A3Q8N4M1 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.49■□□□□ 0.87
SLC44A3Q8N4M1 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC44A3Q8N4M1 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC44A3Q8N4M1 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.49■□□□□ 0.87
SLC44A3Q8N4M1 TSPY14P-201ENST00000303979 915 ntBASIC20.49■□□□□ 0.87
SLC44A3Q8N4M1 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.49■□□□□ 0.87
SLC44A3Q8N4M1 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.49■□□□□ 0.87
SLC44A3Q8N4M1 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SLC44A3Q8N4M1 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.49■□□□□ 0.87
SLC44A3Q8N4M1 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.49■□□□□ 0.87
SLC44A3Q8N4M1 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC44A3Q8N4M1 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.49■□□□□ 0.87
SLC44A3Q8N4M1 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms