Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 POU5F1P3-201ENST00000428824 1078 ntBASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 PTBP1P-201ENST00000554374 1601 ntBASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 TCF3P1-201ENST00000423021 1937 ntBASIC19.53■□□□□ 0.72
PTCHD3Q3KNS1 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.52■□□□□ 0.72
PTCHD3Q3KNS1 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.52■□□□□ 0.72
PTCHD3Q3KNS1 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTCHD3Q3KNS1 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTCHD3Q3KNS1 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
PTCHD3Q3KNS1 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTCHD3Q3KNS1 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PTCHD3Q3KNS1 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC19.52■□□□□ 0.72
PTCHD3Q3KNS1 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTCHD3Q3KNS1 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTCHD3Q3KNS1 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.52■□□□□ 0.72
PTCHD3Q3KNS1 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
PTCHD3Q3KNS1 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
PTCHD3Q3KNS1 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
PTCHD3Q3KNS1 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.51■□□□□ 0.71
PTCHD3Q3KNS1 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTCHD3Q3KNS1 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
PTCHD3Q3KNS1 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.51■□□□□ 0.71
PTCHD3Q3KNS1 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.51■□□□□ 0.71
PTCHD3Q3KNS1 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTCHD3Q3KNS1 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTCHD3Q3KNS1 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTCHD3Q3KNS1 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.51■□□□□ 0.71
PTCHD3Q3KNS1 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTCHD3Q3KNS1 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTCHD3Q3KNS1 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.51■□□□□ 0.71
PTCHD3Q3KNS1 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.51■□□□□ 0.71
PTCHD3Q3KNS1 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTCHD3Q3KNS1 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTCHD3Q3KNS1 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTCHD3Q3KNS1 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTCHD3Q3KNS1 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
PTCHD3Q3KNS1 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
PTCHD3Q3KNS1 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTCHD3Q3KNS1 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
PTCHD3Q3KNS1 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.5■□□□□ 0.71
PTCHD3Q3KNS1 BX119927.1-201ENST00000636596 1552 ntBASIC19.5■□□□□ 0.71
PTCHD3Q3KNS1 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.5■□□□□ 0.71
PTCHD3Q3KNS1 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTCHD3Q3KNS1 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTCHD3Q3KNS1 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.5■□□□□ 0.71
PTCHD3Q3KNS1 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.5■□□□□ 0.71
PTCHD3Q3KNS1 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.5■□□□□ 0.71
PTCHD3Q3KNS1 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.5■□□□□ 0.71
PTCHD3Q3KNS1 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.5■□□□□ 0.71
PTCHD3Q3KNS1 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
PTCHD3Q3KNS1 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTCHD3Q3KNS1 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTCHD3Q3KNS1 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTCHD3Q3KNS1 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PTCHD3Q3KNS1 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTCHD3Q3KNS1 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.49■□□□□ 0.71
PTCHD3Q3KNS1 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
PTCHD3Q3KNS1 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.49■□□□□ 0.71
PTCHD3Q3KNS1 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
PTCHD3Q3KNS1 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.49■□□□□ 0.71
PTCHD3Q3KNS1 C2orf69P4-201ENST00000565394 541 ntBASIC19.49■□□□□ 0.71
PTCHD3Q3KNS1 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.49■□□□□ 0.71
PTCHD3Q3KNS1 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.49■□□□□ 0.71
PTCHD3Q3KNS1 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms