Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HDAC4P56524 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HDAC4P56524 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
HDAC4P56524 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HDAC4P56524 AC069152.1-201ENST00000438030 544 ntBASIC20.88■□□□□ 0.93
HDAC4P56524 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
HDAC4P56524 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.88■□□□□ 0.93
HDAC4P56524 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.88■□□□□ 0.93
HDAC4P56524 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
HDAC4P56524 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.88■□□□□ 0.93
HDAC4P56524 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HDAC4P56524 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HDAC4P56524 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HDAC4P56524 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.88■□□□□ 0.93
HDAC4P56524 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
HDAC4P56524 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
HDAC4P56524 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HDAC4P56524 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
HDAC4P56524 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.88■□□□□ 0.93
HDAC4P56524 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HDAC4P56524 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.87■□□□□ 0.93
HDAC4P56524 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HDAC4P56524 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HDAC4P56524 AL691432.2-201ENST00000607222 2038 ntBASIC20.87■□□□□ 0.93
HDAC4P56524 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
HDAC4P56524 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HDAC4P56524 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.87■□□□□ 0.93
HDAC4P56524 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HDAC4P56524 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HDAC4P56524 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.87■□□□□ 0.93
HDAC4P56524 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.87■□□□□ 0.93
HDAC4P56524 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.87■□□□□ 0.93
HDAC4P56524 AC023632.3-201ENST00000521633 145 ntBASIC20.87■□□□□ 0.93
HDAC4P56524 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HDAC4P56524 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.87■□□□□ 0.93
HDAC4P56524 AC083880.1-201ENST00000608266 535 ntBASIC20.87■□□□□ 0.93
HDAC4P56524 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HDAC4P56524 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HDAC4P56524 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HDAC4P56524 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HDAC4P56524 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.87■□□□□ 0.93
HDAC4P56524 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HDAC4P56524 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
HDAC4P56524 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HDAC4P56524 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HDAC4P56524 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HDAC4P56524 KRT8P20-201ENST00000423953 1409 ntBASIC20.87■□□□□ 0.93
HDAC4P56524 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
HDAC4P56524 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HDAC4P56524 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
HDAC4P56524 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HDAC4P56524 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HDAC4P56524 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HDAC4P56524 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HDAC4P56524 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HDAC4P56524 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.86■□□□□ 0.93
HDAC4P56524 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HDAC4P56524 AL355802.2-201ENST00000402069 882 ntBASIC20.86■□□□□ 0.93
HDAC4P56524 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
HDAC4P56524 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HDAC4P56524 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC20.86■□□□□ 0.93
HDAC4P56524 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HDAC4P56524 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.86■□□□□ 0.93
HDAC4P56524 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HDAC4P56524 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
HDAC4P56524 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
HDAC4P56524 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HDAC4P56524 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.86■□□□□ 0.93
HDAC4P56524 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HDAC4P56524 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HDAC4P56524 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HDAC4P56524 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HDAC4P56524 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HDAC4P56524 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.85■□□□□ 0.93
HDAC4P56524 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HDAC4P56524 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.85■□□□□ 0.93
HDAC4P56524 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HDAC4P56524 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HDAC4P56524 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HDAC4P56524 AC097658.1-201ENST00000475555 843 ntBASIC20.85■□□□□ 0.93
HDAC4P56524 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.85■□□□□ 0.93
HDAC4P56524 AC133041.1-202ENST00000642053 222 ntBASIC20.85■□□□□ 0.93
HDAC4P56524 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
HDAC4P56524 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.85■□□□□ 0.93
HDAC4P56524 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.85■□□□□ 0.93
HDAC4P56524 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.85■□□□□ 0.93
HDAC4P56524 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.85■□□□□ 0.93
HDAC4P56524 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.85■□□□□ 0.93
HDAC4P56524 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HDAC4P56524 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
HDAC4P56524 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HDAC4P56524 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HDAC4P56524 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HDAC4P56524 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.84■□□□□ 0.93
HDAC4P56524 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HDAC4P56524 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HDAC4P56524 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HDAC4P56524 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.84■□□□□ 0.93
HDAC4P56524 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.84■□□□□ 0.93
HDAC4P56524 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms