Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH6P55285 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.78■□□□□ 0.92
CDH6P55285 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.78■□□□□ 0.92
CDH6P55285 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.78■□□□□ 0.92
CDH6P55285 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
CDH6P55285 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.78■□□□□ 0.92
CDH6P55285 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CDH6P55285 AL031963.3-201ENST00000606441 850 ntBASIC20.78■□□□□ 0.92
CDH6P55285 AL121832.2-201ENST00000610979 668 ntBASIC20.78■□□□□ 0.92
CDH6P55285 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH6P55285 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH6P55285 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH6P55285 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CDH6P55285 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH6P55285 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH6P55285 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH6P55285 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDH6P55285 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.78■□□□□ 0.92
CDH6P55285 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.78■□□□□ 0.92
CDH6P55285 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH6P55285 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
CDH6P55285 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDH6P55285 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH6P55285 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDH6P55285 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH6P55285 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH6P55285 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.77■□□□□ 0.92
CDH6P55285 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.77■□□□□ 0.92
CDH6P55285 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.77■□□□□ 0.92
CDH6P55285 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDH6P55285 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.77■□□□□ 0.92
CDH6P55285 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDH6P55285 KRT8P20-201ENST00000423953 1409 ntBASIC20.77■□□□□ 0.91
CDH6P55285 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
CDH6P55285 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CDH6P55285 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CDH6P55285 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH6P55285 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH6P55285 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH6P55285 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.76■□□□□ 0.91
CDH6P55285 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CDH6P55285 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.76■□□□□ 0.91
CDH6P55285 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CDH6P55285 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH6P55285 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.76■□□□□ 0.91
CDH6P55285 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH6P55285 NCF1B-203ENST00000435988 1254 ntBASIC20.76■□□□□ 0.91
CDH6P55285 AC083906.2-201ENST00000511578 360 ntBASIC20.76■□□□□ 0.91
CDH6P55285 AC090192.1-201ENST00000517740 490 ntBASIC20.76■□□□□ 0.91
CDH6P55285 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CDH6P55285 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDH6P55285 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.76■□□□□ 0.91
CDH6P55285 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDH6P55285 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDH6P55285 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.76■□□□□ 0.91
CDH6P55285 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.76■□□□□ 0.91
CDH6P55285 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CDH6P55285 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH6P55285 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.75■□□□□ 0.91
CDH6P55285 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH6P55285 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CDH6P55285 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.75■□□□□ 0.91
CDH6P55285 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDH6P55285 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.75■□□□□ 0.91
CDH6P55285 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.75■□□□□ 0.91
CDH6P55285 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDH6P55285 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH6P55285 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH6P55285 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.75■□□□□ 0.91
CDH6P55285 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.75■□□□□ 0.91
CDH6P55285 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDH6P55285 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDH6P55285 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDH6P55285 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDH6P55285 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CDH6P55285 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
CDH6P55285 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CDH6P55285 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CDH6P55285 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
CDH6P55285 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDH6P55285 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CDH6P55285 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.74■□□□□ 0.91
CDH6P55285 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.74■□□□□ 0.91
CDH6P55285 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDH6P55285 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.74■□□□□ 0.91
CDH6P55285 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.74■□□□□ 0.91
CDH6P55285 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CDH6P55285 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.74■□□□□ 0.91
CDH6P55285 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.74■□□□□ 0.91
CDH6P55285 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CDH6P55285 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CDH6P55285 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CDH6P55285 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CDH6P55285 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDH6P55285 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDH6P55285 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDH6P55285 KRT16P6-202ENST00000425692 1426 ntBASIC20.73■□□□□ 0.91
CDH6P55285 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDH6P55285 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CDH6P55285 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms