Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
EPHB3P54753 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.94■□□□□ 0.94
EPHB3P54753 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
EPHB3P54753 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
EPHB3P54753 DPP3P2-201ENST00000416030 1696 ntBASIC20.94■□□□□ 0.94
EPHB3P54753 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
EPHB3P54753 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.94■□□□□ 0.94
EPHB3P54753 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.94■□□□□ 0.94
EPHB3P54753 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.94■□□□□ 0.94
EPHB3P54753 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
EPHB3P54753 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.94■□□□□ 0.94
EPHB3P54753 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
EPHB3P54753 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
EPHB3P54753 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
EPHB3P54753 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
EPHB3P54753 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
EPHB3P54753 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
EPHB3P54753 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
EPHB3P54753 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
EPHB3P54753 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.93■□□□□ 0.94
EPHB3P54753 ECEL1P3-201ENST00000427961 737 ntBASIC20.93■□□□□ 0.94
EPHB3P54753 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.93■□□□□ 0.94
EPHB3P54753 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.93■□□□□ 0.94
EPHB3P54753 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.93■□□□□ 0.94
EPHB3P54753 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
EPHB3P54753 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.93■□□□□ 0.94
EPHB3P54753 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.93■□□□□ 0.94
EPHB3P54753 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
EPHB3P54753 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
EPHB3P54753 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
EPHB3P54753 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
EPHB3P54753 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
EPHB3P54753 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
EPHB3P54753 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
EPHB3P54753 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
EPHB3P54753 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
EPHB3P54753 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.92■□□□□ 0.94
EPHB3P54753 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.92■□□□□ 0.94
EPHB3P54753 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
EPHB3P54753 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
EPHB3P54753 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
EPHB3P54753 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
EPHB3P54753 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
EPHB3P54753 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
EPHB3P54753 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
EPHB3P54753 CD177P1-201ENST00000606252 935 ntBASIC20.92■□□□□ 0.94
EPHB3P54753 AC026471.5-201ENST00000615068 467 ntBASIC20.92■□□□□ 0.94
EPHB3P54753 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.92■□□□□ 0.94
EPHB3P54753 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.92■□□□□ 0.94
EPHB3P54753 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
EPHB3P54753 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
EPHB3P54753 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
EPHB3P54753 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
EPHB3P54753 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
EPHB3P54753 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
EPHB3P54753 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
EPHB3P54753 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
EPHB3P54753 AL355355.2-201ENST00000442321 338 ntBASIC20.91■□□□□ 0.94
EPHB3P54753 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
EPHB3P54753 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.91■□□□□ 0.94
EPHB3P54753 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
EPHB3P54753 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.91■□□□□ 0.94
EPHB3P54753 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.91■□□□□ 0.94
EPHB3P54753 LINC01023-201ENST00000606054 436 ntBASIC20.91■□□□□ 0.94
EPHB3P54753 AC073195.1-201ENST00000607241 877 ntBASIC20.91■□□□□ 0.94
EPHB3P54753 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.91■□□□□ 0.94
EPHB3P54753 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.91■□□□□ 0.94
EPHB3P54753 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.91■□□□□ 0.94
EPHB3P54753 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
EPHB3P54753 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
EPHB3P54753 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
EPHB3P54753 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
EPHB3P54753 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
EPHB3P54753 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.9■□□□□ 0.94
EPHB3P54753 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.9■□□□□ 0.94
EPHB3P54753 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
EPHB3P54753 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
EPHB3P54753 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
EPHB3P54753 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
EPHB3P54753 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
EPHB3P54753 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.9■□□□□ 0.94
EPHB3P54753 AP002982.1-201ENST00000492365 877 ntBASIC20.9■□□□□ 0.94
EPHB3P54753 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.9■□□□□ 0.94
EPHB3P54753 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.9■□□□□ 0.94
EPHB3P54753 AL355075.4-201ENST00000554988 638 ntBASIC20.9■□□□□ 0.94
EPHB3P54753 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.9■□□□□ 0.94
EPHB3P54753 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.9■□□□□ 0.94
EPHB3P54753 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
EPHB3P54753 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
EPHB3P54753 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
EPHB3P54753 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
EPHB3P54753 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
EPHB3P54753 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
EPHB3P54753 AC092720.2-201ENST00000602388 1665 ntBASIC20.89■□□□□ 0.94
EPHB3P54753 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.89■□□□□ 0.94
EPHB3P54753 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.94
EPHB3P54753 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
EPHB3P54753 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
EPHB3P54753 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
EPHB3P54753 FAM197Y1-201ENST00000421178 764 ntBASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms