Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.55■□□□□ 0.72
SHMT2P34897 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHMT2P34897 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
SHMT2P34897 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHMT2P34897 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SHMT2P34897 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SHMT2P34897 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.54■□□□□ 0.72
SHMT2P34897 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.54■□□□□ 0.72
SHMT2P34897 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.54■□□□□ 0.72
SHMT2P34897 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHMT2P34897 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SHMT2P34897 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.54■□□□□ 0.72
SHMT2P34897 AC073314.1-201ENST00000568729 2216 ntBASIC19.54■□□□□ 0.72
SHMT2P34897 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SHMT2P34897 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.54■□□□□ 0.72
SHMT2P34897 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SHMT2P34897 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.54■□□□□ 0.72
SHMT2P34897 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SHMT2P34897 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.54■□□□□ 0.72
SHMT2P34897 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.54■□□□□ 0.72
SHMT2P34897 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SHMT2P34897 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHMT2P34897 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHMT2P34897 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.54■□□□□ 0.72
SHMT2P34897 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHMT2P34897 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.54■□□□□ 0.72
SHMT2P34897 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SHMT2P34897 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.54■□□□□ 0.72
SHMT2P34897 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
SHMT2P34897 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHMT2P34897 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHMT2P34897 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHMT2P34897 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SHMT2P34897 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHMT2P34897 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
SHMT2P34897 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHMT2P34897 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SHMT2P34897 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.53■□□□□ 0.72
SHMT2P34897 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.53■□□□□ 0.72
SHMT2P34897 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.53■□□□□ 0.72
SHMT2P34897 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.53■□□□□ 0.72
SHMT2P34897 UNC93B5-201ENST00000530315 699 ntBASIC19.53■□□□□ 0.72
SHMT2P34897 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
SHMT2P34897 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHMT2P34897 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHMT2P34897 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
SHMT2P34897 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHMT2P34897 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHMT2P34897 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SHMT2P34897 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHMT2P34897 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHMT2P34897 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SHMT2P34897 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SHMT2P34897 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
SHMT2P34897 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SHMT2P34897 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SHMT2P34897 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHMT2P34897 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHMT2P34897 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHMT2P34897 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.52■□□□□ 0.72
SHMT2P34897 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHMT2P34897 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHMT2P34897 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHMT2P34897 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHMT2P34897 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHMT2P34897 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC19.52■□□□□ 0.72
SHMT2P34897 AC023632.3-201ENST00000521633 145 ntBASIC19.52■□□□□ 0.72
SHMT2P34897 REXO2-208ENST00000539754 791 ntTSL 2 BASIC19.52■□□□□ 0.72
SHMT2P34897 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.52■□□□□ 0.72
SHMT2P34897 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.52■□□□□ 0.72
SHMT2P34897 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHMT2P34897 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.52■□□□□ 0.72
SHMT2P34897 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SHMT2P34897 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
SHMT2P34897 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SHMT2P34897 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.52■□□□□ 0.71
SHMT2P34897 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHMT2P34897 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.51■□□□□ 0.71
SHMT2P34897 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.51■□□□□ 0.71
SHMT2P34897 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.51■□□□□ 0.71
SHMT2P34897 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.51■□□□□ 0.71
SHMT2P34897 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.51■□□□□ 0.71
SHMT2P34897 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.51■□□□□ 0.71
SHMT2P34897 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.51■□□□□ 0.71
SHMT2P34897 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.51■□□□□ 0.71
SHMT2P34897 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHMT2P34897 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.51■□□□□ 0.71
SHMT2P34897 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
SHMT2P34897 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHMT2P34897 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHMT2P34897 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHMT2P34897 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHMT2P34897 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHMT2P34897 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHMT2P34897 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SHMT2P34897 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHMT2P34897 AL390719.1-204ENST00000412397 1219 ntBASIC19.51■□□□□ 0.71
SHMT2P34897 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SHMT2P34897 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.51■□□□□ 0.71
SHMT2P34897 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms