Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CIITAP33076 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC22.56■■□□□ 1.2
CIITAP33076 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CIITAP33076 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC22.56■■□□□ 1.2
CIITAP33076 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CIITAP33076 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CIITAP33076 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC22.55■■□□□ 1.2
CIITAP33076 GCSHP5-201ENST00000443090 522 ntBASIC22.55■■□□□ 1.2
CIITAP33076 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC22.55■■□□□ 1.2
CIITAP33076 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC22.55■■□□□ 1.2
CIITAP33076 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC22.55■■□□□ 1.2
CIITAP33076 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CIITAP33076 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CIITAP33076 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CIITAP33076 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC22.55■■□□□ 1.2
CIITAP33076 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CIITAP33076 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CIITAP33076 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
CIITAP33076 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CIITAP33076 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CIITAP33076 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC22.55■■□□□ 1.2
CIITAP33076 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
CIITAP33076 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC22.54■■□□□ 1.2
CIITAP33076 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CIITAP33076 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CIITAP33076 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CIITAP33076 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CIITAP33076 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CIITAP33076 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
CIITAP33076 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC22.54■■□□□ 1.2
CIITAP33076 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC22.54■■□□□ 1.2
CIITAP33076 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC22.54■■□□□ 1.2
CIITAP33076 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC22.54■■□□□ 1.2
CIITAP33076 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC22.54■■□□□ 1.2
CIITAP33076 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CIITAP33076 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CIITAP33076 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CIITAP33076 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CIITAP33076 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC22.54■■□□□ 1.2
CIITAP33076 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC22.54■■□□□ 1.2
CIITAP33076 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC22.54■■□□□ 1.2
CIITAP33076 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CIITAP33076 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CIITAP33076 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
CIITAP33076 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CIITAP33076 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CIITAP33076 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CIITAP33076 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CIITAP33076 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC22.53■■□□□ 1.2
CIITAP33076 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC22.53■■□□□ 1.2
CIITAP33076 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
CIITAP33076 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC22.53■■□□□ 1.2
CIITAP33076 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CIITAP33076 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
CIITAP33076 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC22.53■■□□□ 1.2
CIITAP33076 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC22.53■■□□□ 1.2
CIITAP33076 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
CIITAP33076 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC22.53■■□□□ 1.2
CIITAP33076 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC22.53■■□□□ 1.2
CIITAP33076 AL121906.2-201ENST00000621597 723 ntBASIC22.53■■□□□ 1.2
CIITAP33076 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CIITAP33076 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CIITAP33076 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CIITAP33076 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC22.53■■□□□ 1.2
CIITAP33076 STK25-204ENST00000405585 1643 ntTSL 2 BASIC22.53■■□□□ 1.2
CIITAP33076 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CIITAP33076 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CIITAP33076 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CIITAP33076 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CIITAP33076 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CIITAP33076 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CIITAP33076 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CIITAP33076 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC22.52■■□□□ 1.2
CIITAP33076 AC116351.2-201ENST00000606540 1585 ntBASIC22.52■■□□□ 1.2
CIITAP33076 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
CIITAP33076 CALM3-202ENST00000391918 702 ntTSL 2 BASIC22.52■■□□□ 1.2
CIITAP33076 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CIITAP33076 SERF2-207ENST00000409614 582 ntTSL 2 BASIC22.52■■□□□ 1.2
CIITAP33076 AC133681.1-201ENST00000465482 601 ntBASIC22.52■■□□□ 1.2
CIITAP33076 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC22.52■■□□□ 1.2
CIITAP33076 RNF121-214ENST00000533380 870 ntTSL 3 BASIC22.52■■□□□ 1.2
CIITAP33076 AL359736.2-201ENST00000621992 437 ntBASIC22.52■■□□□ 1.2
CIITAP33076 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
CIITAP33076 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CIITAP33076 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC22.52■■□□□ 1.2
CIITAP33076 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
CIITAP33076 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
CIITAP33076 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CIITAP33076 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CIITAP33076 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC22.51■■□□□ 1.19
CIITAP33076 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CIITAP33076 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC22.51■■□□□ 1.19
CIITAP33076 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CIITAP33076 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC22.51■■□□□ 1.19
CIITAP33076 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CIITAP33076 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC22.51■■□□□ 1.19
CIITAP33076 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CIITAP33076 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CIITAP33076 TREX2-204ENST00000370212 861 ntTSL 5 BASIC22.51■■□□□ 1.19
CIITAP33076 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms