Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.05■□□□□ 0.96
COL6A3P12111 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL6A3P12111 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL6A3P12111 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL6A3P12111 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL6A3P12111 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL6A3P12111 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.04■□□□□ 0.96
COL6A3P12111 PPIH-202ENST00000372549 327 ntTSL 3 BASIC21.04■□□□□ 0.96
COL6A3P12111 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL6A3P12111 COX10-202ENST00000429152 875 ntTSL 2 BASIC21.04■□□□□ 0.96
COL6A3P12111 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL6A3P12111 SPDYE13P-201ENST00000445314 798 ntBASIC21.04■□□□□ 0.96
COL6A3P12111 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC21.04■□□□□ 0.96
COL6A3P12111 AC092338.2-201ENST00000568827 1415 ntBASIC21.04■□□□□ 0.96
COL6A3P12111 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL6A3P12111 SNX5-210ENST00000481323 562 ntTSL 3 BASIC21.04■□□□□ 0.96
COL6A3P12111 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC21.04■□□□□ 0.96
COL6A3P12111 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL6A3P12111 SLC25A1P2-201ENST00000430693 912 ntBASIC21.03■□□□□ 0.96
COL6A3P12111 AC011506.1-201ENST00000474329 610 ntBASIC21.03■□□□□ 0.96
COL6A3P12111 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A3P12111 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A3P12111 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
COL6A3P12111 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A3P12111 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A3P12111 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A3P12111 AC141257.4-201ENST00000634557 245 ntBASIC21.03■□□□□ 0.96
COL6A3P12111 AC136944.6-201ENST00000634818 245 ntBASIC21.03■□□□□ 0.96
COL6A3P12111 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A3P12111 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.03■□□□□ 0.96
COL6A3P12111 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A3P12111 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A3P12111 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.03■□□□□ 0.96
COL6A3P12111 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A3P12111 AC079776.4-201ENST00000511039 504 ntBASIC21.03■□□□□ 0.96
COL6A3P12111 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A3P12111 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A3P12111 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
COL6A3P12111 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A3P12111 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL6A3P12111 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL6A3P12111 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL6A3P12111 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.02■□□□□ 0.96
COL6A3P12111 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL6A3P12111 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL6A3P12111 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL6A3P12111 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL6A3P12111 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC21.02■□□□□ 0.96
COL6A3P12111 AL023803.3-201ENST00000615559 522 ntBASIC21.02■□□□□ 0.96
COL6A3P12111 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC21.02■□□□□ 0.96
COL6A3P12111 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC21.02■□□□□ 0.96
COL6A3P12111 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL6A3P12111 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC21.01■□□□□ 0.95
COL6A3P12111 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL6A3P12111 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC21.01■□□□□ 0.95
COL6A3P12111 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC21.01■□□□□ 0.95
COL6A3P12111 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL6A3P12111 AC092865.5-201ENST00000545435 363 ntBASIC21.01■□□□□ 0.95
COL6A3P12111 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL6A3P12111 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.01■□□□□ 0.95
COL6A3P12111 ANOS2P-203ENST00000472227 1816 ntBASIC21.01■□□□□ 0.95
COL6A3P12111 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL6A3P12111 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC21.01■□□□□ 0.95
COL6A3P12111 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.01■□□□□ 0.95
COL6A3P12111 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
COL6A3P12111 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC21.01■□□□□ 0.95
COL6A3P12111 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.01■□□□□ 0.95
COL6A3P12111 CALM3-211ENST00000598871 561 ntTSL 4 BASIC21.01■□□□□ 0.95
COL6A3P12111 AF228730.7-201ENST00000641842 219 ntBASIC21.01■□□□□ 0.95
COL6A3P12111 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL6A3P12111 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL6A3P12111 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL6A3P12111 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL6A3P12111 AC096733.2-201ENST00000609937 1394 ntBASIC21■□□□□ 0.95
COL6A3P12111 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC21■□□□□ 0.95
COL6A3P12111 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL6A3P12111 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL6A3P12111 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL6A3P12111 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
COL6A3P12111 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL6A3P12111 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL6A3P12111 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL6A3P12111 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL6A3P12111 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A3P12111 AL356652.1-201ENST00000615962 565 ntBASIC20.99■□□□□ 0.95
COL6A3P12111 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A3P12111 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A3P12111 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A3P12111 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.99■□□□□ 0.95
COL6A3P12111 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A3P12111 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
COL6A3P12111 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A3P12111 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A3P12111 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A3P12111 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.99■□□□□ 0.95
COL6A3P12111 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.99■□□□□ 0.95
COL6A3P12111 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A3P12111 AL512604.3-201ENST00000569583 964 ntBASIC20.99■□□□□ 0.95
COL6A3P12111 AC010653.2-201ENST00000623505 997 ntBASIC20.99■□□□□ 0.95
COL6A3P12111 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms