Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 DECR2-212ENST00000627716 352 ntTSL 2 BASIC24.62■■□□□ 1.53
COL4A1P02462 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL4A1P02462 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC24.62■■□□□ 1.53
COL4A1P02462 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC24.62■■□□□ 1.53
COL4A1P02462 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC24.62■■□□□ 1.53
COL4A1P02462 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC24.62■■□□□ 1.53
COL4A1P02462 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
COL4A1P02462 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL4A1P02462 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL4A1P02462 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC24.62■■□□□ 1.53
COL4A1P02462 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC24.62■■□□□ 1.53
COL4A1P02462 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC24.62■■□□□ 1.53
COL4A1P02462 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
COL4A1P02462 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
COL4A1P02462 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL4A1P02462 MESTP1-201ENST00000404287 994 ntBASIC24.62■■□□□ 1.53
COL4A1P02462 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC24.62■■□□□ 1.53
COL4A1P02462 P4HB-223ENST00000576390 439 ntTSL 4 BASIC24.62■■□□□ 1.53
COL4A1P02462 AL445228.2-201ENST00000605589 952 ntBASIC24.62■■□□□ 1.53
COL4A1P02462 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC24.62■■□□□ 1.53
COL4A1P02462 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL4A1P02462 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL4A1P02462 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC24.61■■□□□ 1.53
COL4A1P02462 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC24.61■■□□□ 1.53
COL4A1P02462 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL4A1P02462 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL4A1P02462 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC24.61■■□□□ 1.53
COL4A1P02462 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL4A1P02462 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC24.61■■□□□ 1.53
COL4A1P02462 ABBA01031674.1-201ENST00000635145 728 ntBASIC24.61■■□□□ 1.53
COL4A1P02462 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC24.61■■□□□ 1.53
COL4A1P02462 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL4A1P02462 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL4A1P02462 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL4A1P02462 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL4A1P02462 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
COL4A1P02462 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
COL4A1P02462 AC006128.1-201ENST00000624704 1661 ntBASIC24.6■■□□□ 1.53
COL4A1P02462 AL355355.2-201ENST00000442321 338 ntBASIC24.6■■□□□ 1.53
COL4A1P02462 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC24.6■■□□□ 1.53
COL4A1P02462 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC24.6■■□□□ 1.53
COL4A1P02462 DUT-205ENST00000558813 769 ntTSL 2 BASIC24.6■■□□□ 1.53
COL4A1P02462 TK2-213ENST00000563369 882 ntTSL 5 BASIC24.6■■□□□ 1.53
COL4A1P02462 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
COL4A1P02462 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
COL4A1P02462 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
COL4A1P02462 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
COL4A1P02462 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
COL4A1P02462 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC24.59■■□□□ 1.53
COL4A1P02462 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC24.59■■□□□ 1.53
COL4A1P02462 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC24.59■■□□□ 1.53
COL4A1P02462 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
COL4A1P02462 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC24.59■■□□□ 1.53
COL4A1P02462 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
COL4A1P02462 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC24.59■■□□□ 1.53
COL4A1P02462 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
COL4A1P02462 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
COL4A1P02462 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC24.59■■□□□ 1.53
COL4A1P02462 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
COL4A1P02462 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
COL4A1P02462 AC116562.2-201ENST00000507042 360 ntBASIC24.59■■□□□ 1.53
COL4A1P02462 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
COL4A1P02462 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC24.58■■□□□ 1.53
COL4A1P02462 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
COL4A1P02462 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
COL4A1P02462 MMP23A-201ENST00000234610 1017 ntBASIC24.58■■□□□ 1.53
COL4A1P02462 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC24.58■■□□□ 1.53
COL4A1P02462 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC24.58■■□□□ 1.53
COL4A1P02462 AC145285.6-201ENST00000604632 637 ntBASIC24.58■■□□□ 1.53
COL4A1P02462 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC24.58■■□□□ 1.53
COL4A1P02462 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC24.58■■□□□ 1.53
COL4A1P02462 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
COL4A1P02462 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
COL4A1P02462 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
COL4A1P02462 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC24.58■■□□□ 1.53
COL4A1P02462 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC24.58■■□□□ 1.52
COL4A1P02462 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
COL4A1P02462 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC24.58■■□□□ 1.52
COL4A1P02462 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC24.58■■□□□ 1.52
COL4A1P02462 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC24.58■■□□□ 1.52
COL4A1P02462 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC24.57■■□□□ 1.52
COL4A1P02462 KRT8P17-201ENST00000453110 1448 ntBASIC24.57■■□□□ 1.52
COL4A1P02462 TMPOP1-202ENST00000424642 1267 ntBASIC24.57■■□□□ 1.52
COL4A1P02462 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC24.57■■□□□ 1.52
COL4A1P02462 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
COL4A1P02462 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC24.57■■□□□ 1.52
COL4A1P02462 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
COL4A1P02462 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
COL4A1P02462 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC24.57■■□□□ 1.52
COL4A1P02462 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
COL4A1P02462 KRT16P1-201ENST00000399124 1418 ntBASIC24.57■■□□□ 1.52
COL4A1P02462 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
COL4A1P02462 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC24.56■■□□□ 1.52
COL4A1P02462 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
COL4A1P02462 PRR31-201ENST00000371629 978 ntTSL 2 BASIC24.56■■□□□ 1.52
COL4A1P02462 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC24.56■■□□□ 1.52
COL4A1P02462 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC24.56■■□□□ 1.52
COL4A1P02462 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
COL4A1P02462 AC010947.1-201ENST00000623454 693 ntBASIC24.56■■□□□ 1.52
COL4A1P02462 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms