Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.12■□□□□ 0.65
SEMA3DO95025 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.12■□□□□ 0.65
SEMA3DO95025 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SEMA3DO95025 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SEMA3DO95025 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SEMA3DO95025 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.11■□□□□ 0.65
SEMA3DO95025 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SEMA3DO95025 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.11■□□□□ 0.65
SEMA3DO95025 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SEMA3DO95025 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SEMA3DO95025 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SEMA3DO95025 KRT8P20-201ENST00000423953 1409 ntBASIC19.11■□□□□ 0.65
SEMA3DO95025 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SEMA3DO95025 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SEMA3DO95025 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SEMA3DO95025 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SEMA3DO95025 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SEMA3DO95025 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.11■□□□□ 0.65
SEMA3DO95025 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SEMA3DO95025 AC023632.3-201ENST00000521633 145 ntBASIC19.11■□□□□ 0.65
SEMA3DO95025 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SEMA3DO95025 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.11■□□□□ 0.65
SEMA3DO95025 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SEMA3DO95025 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SEMA3DO95025 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SEMA3DO95025 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SEMA3DO95025 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SEMA3DO95025 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SEMA3DO95025 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SEMA3DO95025 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SEMA3DO95025 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SEMA3DO95025 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.11■□□□□ 0.65
SEMA3DO95025 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
SEMA3DO95025 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SEMA3DO95025 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SEMA3DO95025 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SEMA3DO95025 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SEMA3DO95025 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.1■□□□□ 0.65
SEMA3DO95025 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.1■□□□□ 0.65
SEMA3DO95025 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SEMA3DO95025 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.1■□□□□ 0.65
SEMA3DO95025 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.1■□□□□ 0.65
SEMA3DO95025 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.1■□□□□ 0.65
SEMA3DO95025 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.1■□□□□ 0.65
SEMA3DO95025 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SEMA3DO95025 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SEMA3DO95025 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SEMA3DO95025 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SEMA3DO95025 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SEMA3DO95025 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SEMA3DO95025 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SEMA3DO95025 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SEMA3DO95025 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SEMA3DO95025 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SEMA3DO95025 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SEMA3DO95025 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SEMA3DO95025 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SEMA3DO95025 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SEMA3DO95025 AC112907.3-201ENST00000577781 2400 ntBASIC19.09■□□□□ 0.65
SEMA3DO95025 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SEMA3DO95025 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.09■□□□□ 0.65
SEMA3DO95025 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.09■□□□□ 0.65
SEMA3DO95025 HLA-G-202ENST00000376815 851 ntBASIC19.09■□□□□ 0.65
SEMA3DO95025 HLA-G-203ENST00000376818 1127 ntBASIC19.09■□□□□ 0.65
SEMA3DO95025 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SEMA3DO95025 BX276092.2-201ENST00000417668 665 ntBASIC19.09■□□□□ 0.65
SEMA3DO95025 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.09■□□□□ 0.65
SEMA3DO95025 AC083906.2-201ENST00000511578 360 ntBASIC19.09■□□□□ 0.65
SEMA3DO95025 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.09■□□□□ 0.65
SEMA3DO95025 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.09■□□□□ 0.65
SEMA3DO95025 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
SEMA3DO95025 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
SEMA3DO95025 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SEMA3DO95025 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
SEMA3DO95025 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SEMA3DO95025 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SEMA3DO95025 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
SEMA3DO95025 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SEMA3DO95025 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SEMA3DO95025 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SEMA3DO95025 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.08■□□□□ 0.65
SEMA3DO95025 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SEMA3DO95025 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.08■□□□□ 0.65
SEMA3DO95025 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
SEMA3DO95025 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.08■□□□□ 0.64
SEMA3DO95025 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.08■□□□□ 0.64
SEMA3DO95025 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SEMA3DO95025 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.08■□□□□ 0.64
SEMA3DO95025 NCF1B-203ENST00000435988 1254 ntBASIC19.08■□□□□ 0.64
SEMA3DO95025 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.08■□□□□ 0.64
SEMA3DO95025 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SEMA3DO95025 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
SEMA3DO95025 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.08■□□□□ 0.64
SEMA3DO95025 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SEMA3DO95025 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.08■□□□□ 0.64
SEMA3DO95025 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
SEMA3DO95025 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SEMA3DO95025 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SEMA3DO95025 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SEMA3DO95025 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms