Protein–RNA interactions for Protein: O94782

USP1, Ubiquitin carboxyl-terminal hydrolase 1, humanhuman

Predictions only

Length 785 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP1O94782 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP1O94782 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP1O94782 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.2■□□□□ 0.82
USP1O94782 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.2■□□□□ 0.82
USP1O94782 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.2■□□□□ 0.82
USP1O94782 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.2■□□□□ 0.82
USP1O94782 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.2■□□□□ 0.82
USP1O94782 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.2■□□□□ 0.82
USP1O94782 AC011767.1-201ENST00000617410 1153 ntBASIC20.2■□□□□ 0.82
USP1O94782 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP1O94782 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.2■□□□□ 0.82
USP1O94782 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.2■□□□□ 0.82
USP1O94782 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USP1O94782 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP1O94782 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.2■□□□□ 0.82
USP1O94782 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP1O94782 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP1O94782 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP1O94782 AC125437.2-201ENST00000625180 2167 ntBASIC20.19■□□□□ 0.82
USP1O94782 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP1O94782 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.19■□□□□ 0.82
USP1O94782 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP1O94782 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP1O94782 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
USP1O94782 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP1O94782 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
USP1O94782 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP1O94782 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP1O94782 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.19■□□□□ 0.82
USP1O94782 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.19■□□□□ 0.82
USP1O94782 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.19■□□□□ 0.82
USP1O94782 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USP1O94782 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP1O94782 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP1O94782 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP1O94782 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP1O94782 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP1O94782 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP1O94782 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP1O94782 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP1O94782 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.19■□□□□ 0.82
USP1O94782 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP1O94782 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP1O94782 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
USP1O94782 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP1O94782 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP1O94782 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
USP1O94782 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP1O94782 PTBP1P-201ENST00000554374 1601 ntBASIC20.18■□□□□ 0.82
USP1O94782 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP1O94782 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
USP1O94782 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.18■□□□□ 0.82
USP1O94782 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP1O94782 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
USP1O94782 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.18■□□□□ 0.82
USP1O94782 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.18■□□□□ 0.82
USP1O94782 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP1O94782 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP1O94782 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.18■□□□□ 0.82
USP1O94782 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.18■□□□□ 0.82
USP1O94782 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.18■□□□□ 0.82
USP1O94782 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.18■□□□□ 0.82
USP1O94782 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP1O94782 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.18■□□□□ 0.82
USP1O94782 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP1O94782 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP1O94782 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP1O94782 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP1O94782 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
USP1O94782 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP1O94782 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
USP1O94782 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
USP1O94782 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP1O94782 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP1O94782 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.17■□□□□ 0.82
USP1O94782 BID-214ENST00000617586 542 ntTSL 5 BASIC20.17■□□□□ 0.82
USP1O94782 AC092437.1-201ENST00000624794 1048 ntBASIC20.17■□□□□ 0.82
USP1O94782 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP1O94782 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.17■□□□□ 0.82
USP1O94782 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP1O94782 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.16■□□□□ 0.82
USP1O94782 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USP1O94782 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
USP1O94782 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP1O94782 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP1O94782 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP1O94782 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP1O94782 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.16■□□□□ 0.82
USP1O94782 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP1O94782 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.16■□□□□ 0.82
USP1O94782 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.16■□□□□ 0.82
USP1O94782 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.16■□□□□ 0.82
USP1O94782 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP1O94782 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.16■□□□□ 0.82
USP1O94782 AC105020.6-201ENST00000621523 1217 ntBASIC20.16■□□□□ 0.82
USP1O94782 AC231657.2-201ENST00000624556 255 ntBASIC20.16■□□□□ 0.82
USP1O94782 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP1O94782 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.16■□□□□ 0.82
USP1O94782 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP1O94782 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms