Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 MYCNOS-205ENST00000641950 531 ntBASIC19.56■□□□□ 0.72
VPS4BO75351 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
VPS4BO75351 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS4BO75351 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS4BO75351 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS4BO75351 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4BO75351 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4BO75351 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
VPS4BO75351 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4BO75351 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4BO75351 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
VPS4BO75351 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4BO75351 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4BO75351 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4BO75351 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4BO75351 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.55■□□□□ 0.72
VPS4BO75351 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4BO75351 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4BO75351 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
VPS4BO75351 AC007322.3-201ENST00000426526 701 ntBASIC19.55■□□□□ 0.72
VPS4BO75351 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4BO75351 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.55■□□□□ 0.72
VPS4BO75351 AC133552.2-202ENST00000575694 574 ntBASIC19.55■□□□□ 0.72
VPS4BO75351 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
VPS4BO75351 FAM21FP-204ENST00000608637 956 ntBASIC19.55■□□□□ 0.72
VPS4BO75351 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS4BO75351 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4BO75351 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4BO75351 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4BO75351 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4BO75351 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS4BO75351 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS4BO75351 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.54■□□□□ 0.72
VPS4BO75351 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.54■□□□□ 0.72
VPS4BO75351 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS4BO75351 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS4BO75351 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.54■□□□□ 0.72
VPS4BO75351 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS4BO75351 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS4BO75351 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.54■□□□□ 0.72
VPS4BO75351 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.54■□□□□ 0.72
VPS4BO75351 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS4BO75351 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.54■□□□□ 0.72
VPS4BO75351 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
VPS4BO75351 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS4BO75351 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
VPS4BO75351 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
VPS4BO75351 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS4BO75351 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS4BO75351 TMEM179-206ENST00000616017 1645 ntBASIC19.54■□□□□ 0.72
VPS4BO75351 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS4BO75351 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS4BO75351 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS4BO75351 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS4BO75351 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS4BO75351 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS4BO75351 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS4BO75351 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS4BO75351 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS4BO75351 AC091799.1-201ENST00000422823 811 ntBASIC19.53■□□□□ 0.72
VPS4BO75351 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS4BO75351 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS4BO75351 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS4BO75351 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.53■□□□□ 0.72
VPS4BO75351 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS4BO75351 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS4BO75351 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
VPS4BO75351 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.53■□□□□ 0.72
VPS4BO75351 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.53■□□□□ 0.72
VPS4BO75351 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS4BO75351 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS4BO75351 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
VPS4BO75351 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
VPS4BO75351 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS4BO75351 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS4BO75351 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS4BO75351 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS4BO75351 DPP3P2-201ENST00000416030 1696 ntBASIC19.52■□□□□ 0.72
VPS4BO75351 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS4BO75351 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS4BO75351 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
VPS4BO75351 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
VPS4BO75351 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.52■□□□□ 0.72
VPS4BO75351 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.52■□□□□ 0.72
VPS4BO75351 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS4BO75351 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS4BO75351 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS4BO75351 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.52■□□□□ 0.72
VPS4BO75351 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS4BO75351 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS4BO75351 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.52■□□□□ 0.72
VPS4BO75351 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.52■□□□□ 0.72
VPS4BO75351 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.52■□□□□ 0.72
VPS4BO75351 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS4BO75351 SLC7A5P1-201ENST00000568957 537 ntBASIC19.52■□□□□ 0.72
VPS4BO75351 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.52■□□□□ 0.72
VPS4BO75351 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS4BO75351 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS4BO75351 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS4BO75351 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms