Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PRKNO60260 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PRKNO60260 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PRKNO60260 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
PRKNO60260 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.61■□□□□ 0.57
PRKNO60260 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.61■□□□□ 0.57
PRKNO60260 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PRKNO60260 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.61■□□□□ 0.57
PRKNO60260 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PRKNO60260 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PRKNO60260 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PRKNO60260 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PRKNO60260 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
PRKNO60260 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PRKNO60260 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.61■□□□□ 0.57
PRKNO60260 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.61■□□□□ 0.57
PRKNO60260 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.61■□□□□ 0.57
PRKNO60260 AC008687.6-201ENST00000596318 630 ntBASIC18.61■□□□□ 0.57
PRKNO60260 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.61■□□□□ 0.57
PRKNO60260 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PRKNO60260 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.6■□□□□ 0.57
PRKNO60260 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PRKNO60260 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
PRKNO60260 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.6■□□□□ 0.57
PRKNO60260 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.6■□□□□ 0.57
PRKNO60260 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.6■□□□□ 0.57
PRKNO60260 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PRKNO60260 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PRKNO60260 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PRKNO60260 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PRKNO60260 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.6■□□□□ 0.57
PRKNO60260 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
PRKNO60260 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PRKNO60260 AC023632.3-201ENST00000521633 145 ntBASIC18.6■□□□□ 0.57
PRKNO60260 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.6■□□□□ 0.57
PRKNO60260 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
PRKNO60260 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PRKNO60260 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PRKNO60260 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
PRKNO60260 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PRKNO60260 GABARAPL3-202ENST00000624044 1851 ntBASIC18.6■□□□□ 0.57
PRKNO60260 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
PRKNO60260 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PRKNO60260 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.6■□□□□ 0.57
PRKNO60260 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.6■□□□□ 0.57
PRKNO60260 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.59■□□□□ 0.57
PRKNO60260 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PRKNO60260 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PRKNO60260 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PRKNO60260 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PRKNO60260 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PRKNO60260 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PRKNO60260 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PRKNO60260 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PRKNO60260 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PRKNO60260 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PRKNO60260 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PRKNO60260 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.59■□□□□ 0.57
PRKNO60260 AL390719.1-204ENST00000412397 1219 ntBASIC18.59■□□□□ 0.57
PRKNO60260 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.59■□□□□ 0.57
PRKNO60260 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
PRKNO60260 AC098590.1-201ENST00000468126 897 ntBASIC18.59■□□□□ 0.57
PRKNO60260 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
PRKNO60260 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.59■□□□□ 0.57
PRKNO60260 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.59■□□□□ 0.57
PRKNO60260 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.59■□□□□ 0.57
PRKNO60260 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.59■□□□□ 0.57
PRKNO60260 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PRKNO60260 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
PRKNO60260 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PRKNO60260 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.59■□□□□ 0.57
PRKNO60260 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
PRKNO60260 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PRKNO60260 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PRKNO60260 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PRKNO60260 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.58■□□□□ 0.57
PRKNO60260 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
PRKNO60260 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
PRKNO60260 AC124283.5-201ENST00000624661 1809 ntBASIC18.58■□□□□ 0.57
PRKNO60260 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PRKNO60260 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
PRKNO60260 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
PRKNO60260 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
PRKNO60260 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PRKNO60260 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
PRKNO60260 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
PRKNO60260 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
PRKNO60260 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PRKNO60260 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
PRKNO60260 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.58■□□□□ 0.56
PRKNO60260 AC120498.8-201ENST00000614275 531 ntBASIC18.58■□□□□ 0.56
PRKNO60260 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PRKNO60260 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
PRKNO60260 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PRKNO60260 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PRKNO60260 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
PRKNO60260 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.58■□□□□ 0.56
PRKNO60260 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PRKNO60260 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.57■□□□□ 0.56
PRKNO60260 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms