Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.43■□□□□ 0.86
HOXC11O43248 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC11O43248 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.43■□□□□ 0.86
HOXC11O43248 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.43■□□□□ 0.86
HOXC11O43248 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
HOXC11O43248 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
HOXC11O43248 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
HOXC11O43248 AC007225.1-201ENST00000566331 1836 ntBASIC20.43■□□□□ 0.86
HOXC11O43248 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC11O43248 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
HOXC11O43248 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC11O43248 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC11O43248 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.42■□□□□ 0.86
HOXC11O43248 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.42■□□□□ 0.86
HOXC11O43248 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC11O43248 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.42■□□□□ 0.86
HOXC11O43248 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC11O43248 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC11O43248 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC11O43248 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.42■□□□□ 0.86
HOXC11O43248 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.42■□□□□ 0.86
HOXC11O43248 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC11O43248 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.42■□□□□ 0.86
HOXC11O43248 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC11O43248 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC11O43248 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
HOXC11O43248 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.42■□□□□ 0.86
HOXC11O43248 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC11O43248 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
HOXC11O43248 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC11O43248 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
HOXC11O43248 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.42■□□□□ 0.86
HOXC11O43248 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.41■□□□□ 0.86
HOXC11O43248 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC11O43248 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.41■□□□□ 0.86
HOXC11O43248 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.41■□□□□ 0.86
HOXC11O43248 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC11O43248 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC11O43248 DPP3P2-201ENST00000416030 1696 ntBASIC20.41■□□□□ 0.86
HOXC11O43248 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.41■□□□□ 0.86
HOXC11O43248 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC11O43248 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC11O43248 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.4■□□□□ 0.86
HOXC11O43248 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.4■□□□□ 0.86
HOXC11O43248 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC11O43248 AC211429.1-201ENST00000415277 523 ntBASIC20.4■□□□□ 0.86
HOXC11O43248 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.4■□□□□ 0.86
HOXC11O43248 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.4■□□□□ 0.86
HOXC11O43248 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.4■□□□□ 0.86
HOXC11O43248 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
HOXC11O43248 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
HOXC11O43248 AC026471.5-201ENST00000615068 467 ntBASIC20.4■□□□□ 0.86
HOXC11O43248 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.4■□□□□ 0.86
HOXC11O43248 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HOXC11O43248 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.39■□□□□ 0.86
HOXC11O43248 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
HOXC11O43248 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HOXC11O43248 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.39■□□□□ 0.85
HOXC11O43248 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
HOXC11O43248 ECEL1P3-201ENST00000427961 737 ntBASIC20.39■□□□□ 0.85
HOXC11O43248 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
HOXC11O43248 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HOXC11O43248 TSPY15P-201ENST00000457163 923 ntBASIC20.39■□□□□ 0.85
HOXC11O43248 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.39■□□□□ 0.85
HOXC11O43248 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.39■□□□□ 0.85
HOXC11O43248 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.39■□□□□ 0.85
HOXC11O43248 AL355075.4-201ENST00000554988 638 ntBASIC20.39■□□□□ 0.85
HOXC11O43248 CD177P1-201ENST00000606252 935 ntBASIC20.39■□□□□ 0.85
HOXC11O43248 AC073195.1-201ENST00000607241 877 ntBASIC20.39■□□□□ 0.85
HOXC11O43248 AL353708.3-201ENST00000610272 989 ntBASIC20.39■□□□□ 0.85
HOXC11O43248 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HOXC11O43248 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
HOXC11O43248 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HOXC11O43248 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.39■□□□□ 0.85
HOXC11O43248 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.39■□□□□ 0.85
HOXC11O43248 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HOXC11O43248 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.38■□□□□ 0.85
HOXC11O43248 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
HOXC11O43248 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HOXC11O43248 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HOXC11O43248 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
HOXC11O43248 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HOXC11O43248 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
HOXC11O43248 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.38■□□□□ 0.85
HOXC11O43248 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.38■□□□□ 0.85
HOXC11O43248 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.38■□□□□ 0.85
HOXC11O43248 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.38■□□□□ 0.85
HOXC11O43248 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
HOXC11O43248 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.38■□□□□ 0.85
HOXC11O43248 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HOXC11O43248 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HOXC11O43248 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HOXC11O43248 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.37■□□□□ 0.85
HOXC11O43248 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HOXC11O43248 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HOXC11O43248 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.37■□□□□ 0.85
HOXC11O43248 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
HOXC11O43248 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HOXC11O43248 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HOXC11O43248 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms