Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH4O15457 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH4O15457 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH4O15457 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH4O15457 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
MSH4O15457 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH4O15457 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH4O15457 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
MSH4O15457 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC22.49■■□□□ 1.19
MSH4O15457 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH4O15457 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC22.49■■□□□ 1.19
MSH4O15457 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC22.49■■□□□ 1.19
MSH4O15457 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
MSH4O15457 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC22.49■■□□□ 1.19
MSH4O15457 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH4O15457 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC22.49■■□□□ 1.19
MSH4O15457 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
MSH4O15457 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC22.49■■□□□ 1.19
MSH4O15457 KRT16P6-202ENST00000425692 1426 ntBASIC22.48■■□□□ 1.19
MSH4O15457 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
MSH4O15457 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC22.48■■□□□ 1.19
MSH4O15457 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH4O15457 GCSHP5-201ENST00000443090 522 ntBASIC22.48■■□□□ 1.19
MSH4O15457 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC22.48■■□□□ 1.19
MSH4O15457 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
MSH4O15457 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
MSH4O15457 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH4O15457 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC22.48■■□□□ 1.19
MSH4O15457 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC22.48■■□□□ 1.19
MSH4O15457 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH4O15457 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
MSH4O15457 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH4O15457 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH4O15457 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC22.48■■□□□ 1.19
MSH4O15457 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH4O15457 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH4O15457 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
MSH4O15457 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
MSH4O15457 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
MSH4O15457 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC22.47■■□□□ 1.19
MSH4O15457 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC22.47■■□□□ 1.19
MSH4O15457 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC22.47■■□□□ 1.19
MSH4O15457 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH4O15457 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
MSH4O15457 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC22.47■■□□□ 1.19
MSH4O15457 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
MSH4O15457 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC22.47■■□□□ 1.19
MSH4O15457 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
MSH4O15457 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC22.47■■□□□ 1.19
MSH4O15457 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
MSH4O15457 AL121829.2-201ENST00000620908 328 ntBASIC22.47■■□□□ 1.19
MSH4O15457 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC22.47■■□□□ 1.19
MSH4O15457 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH4O15457 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH4O15457 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
MSH4O15457 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC22.47■■□□□ 1.19
MSH4O15457 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC22.46■■□□□ 1.19
MSH4O15457 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH4O15457 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH4O15457 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
MSH4O15457 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
MSH4O15457 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH4O15457 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH4O15457 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
MSH4O15457 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC22.46■■□□□ 1.19
MSH4O15457 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC22.46■■□□□ 1.19
MSH4O15457 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC22.46■■□□□ 1.19
MSH4O15457 C1QBPP2-201ENST00000528754 825 ntBASIC22.46■■□□□ 1.19
MSH4O15457 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC22.46■■□□□ 1.19
MSH4O15457 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC22.46■■□□□ 1.19
MSH4O15457 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
MSH4O15457 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
MSH4O15457 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH4O15457 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC22.46■■□□□ 1.19
MSH4O15457 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.19
MSH4O15457 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
MSH4O15457 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
MSH4O15457 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH4O15457 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH4O15457 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH4O15457 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
MSH4O15457 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH4O15457 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
MSH4O15457 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC22.45■■□□□ 1.18
MSH4O15457 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH4O15457 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC22.45■■□□□ 1.18
MSH4O15457 RPPH1-201ENST00000516869 333 ntBASIC22.45■■□□□ 1.18
MSH4O15457 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC22.45■■□□□ 1.18
MSH4O15457 AC142381.4-202ENST00000563973 229 ntBASIC22.45■■□□□ 1.18
MSH4O15457 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC22.45■■□□□ 1.18
MSH4O15457 AL359736.2-201ENST00000621992 437 ntBASIC22.45■■□□□ 1.18
MSH4O15457 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH4O15457 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
MSH4O15457 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH4O15457 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH4O15457 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC22.45■■□□□ 1.18
MSH4O15457 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
MSH4O15457 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
MSH4O15457 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
MSH4O15457 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC22.45■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms