Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC34.47■■■■□ 3.11
CUX2O14529 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC34.47■■■■□ 3.11
CUX2O14529 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
CUX2O14529 KRT18P38-201ENST00000449496 1282 ntBASIC34.46■■■■□ 3.11
CUX2O14529 UNC93B7-201ENST00000509439 705 ntBASIC34.46■■■■□ 3.11
CUX2O14529 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC34.46■■■■□ 3.11
CUX2O14529 GXYLT1P4-201ENST00000613576 1192 ntBASIC34.46■■■■□ 3.11
CUX2O14529 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC34.46■■■■□ 3.11
CUX2O14529 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC34.46■■■■□ 3.11
CUX2O14529 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
CUX2O14529 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC34.46■■■■□ 3.11
CUX2O14529 AL445675.2-201ENST00000620291 557 ntBASIC34.46■■■■□ 3.11
CUX2O14529 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.11
CUX2O14529 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.11
CUX2O14529 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.11
CUX2O14529 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC34.45■■■■□ 3.11
CUX2O14529 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC34.45■■■■□ 3.11
CUX2O14529 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.1
CUX2O14529 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.1
CUX2O14529 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC34.45■■■■□ 3.1
CUX2O14529 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC34.45■■■■□ 3.1
CUX2O14529 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC34.45■■■■□ 3.1
CUX2O14529 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC34.45■■■■□ 3.1
CUX2O14529 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC34.45■■■■□ 3.1
CUX2O14529 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC34.45■■■■□ 3.1
CUX2O14529 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC34.44■■■■□ 3.1
CUX2O14529 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC34.44■■■■□ 3.1
CUX2O14529 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
CUX2O14529 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC34.44■■■■□ 3.1
CUX2O14529 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC34.44■■■■□ 3.1
CUX2O14529 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
CUX2O14529 HIST1H2APS4-201ENST00000362070 348 ntBASIC34.44■■■■□ 3.1
CUX2O14529 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
CUX2O14529 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC34.44■■■■□ 3.1
CUX2O14529 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC34.44■■■■□ 3.1
CUX2O14529 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC34.44■■■■□ 3.1
CUX2O14529 AL031008.1-201ENST00000619963 541 ntBASIC34.44■■■■□ 3.1
CUX2O14529 AC117500.6-201ENST00000624871 588 ntBASIC34.44■■■■□ 3.1
CUX2O14529 AC116562.4-202ENST00000641738 218 ntBASIC34.44■■■■□ 3.1
CUX2O14529 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
CUX2O14529 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
CUX2O14529 KRT18P13-201ENST00000400056 1290 ntBASIC34.43■■■■□ 3.1
CUX2O14529 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC34.43■■■■□ 3.1
CUX2O14529 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC34.43■■■■□ 3.1
CUX2O14529 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
CUX2O14529 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC34.43■■■■□ 3.1
CUX2O14529 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC34.43■■■■□ 3.1
CUX2O14529 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC34.43■■■■□ 3.1
CUX2O14529 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC34.42■■■■□ 3.1
CUX2O14529 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC34.42■■■■□ 3.1
CUX2O14529 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC34.42■■■■□ 3.1
CUX2O14529 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC34.42■■■■□ 3.1
CUX2O14529 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC34.42■■■■□ 3.1
CUX2O14529 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC34.42■■■■□ 3.1
CUX2O14529 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC34.42■■■■□ 3.1
CUX2O14529 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC34.42■■■■□ 3.1
CUX2O14529 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC34.42■■■■□ 3.1
CUX2O14529 AL441883.1-201ENST00000566170 1045 ntBASIC34.42■■■■□ 3.1
CUX2O14529 AL031432.5-201ENST00000641059 760 ntBASIC34.42■■■■□ 3.1
CUX2O14529 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC34.42■■■■□ 3.1
CUX2O14529 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC34.42■■■■□ 3.1
CUX2O14529 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC34.42■■■■□ 3.1
CUX2O14529 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC34.42■■■■□ 3.1
CUX2O14529 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC34.42■■■■□ 3.1
CUX2O14529 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC34.42■■■■□ 3.1
CUX2O14529 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC34.41■■■■□ 3.1
CUX2O14529 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC34.41■■■■□ 3.1
CUX2O14529 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC34.41■■■■□ 3.1
CUX2O14529 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC34.41■■■■□ 3.1
CUX2O14529 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC34.41■■■■□ 3.1
CUX2O14529 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC34.41■■■■□ 3.1
CUX2O14529 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC34.41■■■■□ 3.1
CUX2O14529 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC34.41■■■■□ 3.1
CUX2O14529 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC34.41■■■■□ 3.1
CUX2O14529 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
CUX2O14529 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
CUX2O14529 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
CUX2O14529 HMGN1P19-201ENST00000436976 333 ntBASIC34.4■■■■□ 3.1
CUX2O14529 AC011506.1-201ENST00000474329 610 ntBASIC34.4■■■■□ 3.1
CUX2O14529 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC34.4■■■■□ 3.1
CUX2O14529 AC023632.3-201ENST00000521633 145 ntBASIC34.4■■■■□ 3.1
CUX2O14529 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC34.4■■■■□ 3.1
CUX2O14529 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
CUX2O14529 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
CUX2O14529 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
CUX2O14529 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC34.4■■■■□ 3.1
CUX2O14529 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC34.39■■■■□ 3.1
CUX2O14529 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC34.39■■■■□ 3.1
CUX2O14529 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC34.39■■■■□ 3.1
CUX2O14529 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC34.39■■■■□ 3.1
CUX2O14529 AC104692.2-201ENST00000603054 253 ntBASIC34.39■■■■□ 3.1
CUX2O14529 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC34.39■■■■□ 3.1
CUX2O14529 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
CUX2O14529 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC34.39■■■■□ 3.1
CUX2O14529 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC34.39■■■■□ 3.1
CUX2O14529 C1QL1P1-201ENST00000568105 661 ntBASIC34.39■■■■□ 3.1
CUX2O14529 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC34.39■■■■□ 3.1
CUX2O14529 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC34.38■■■■□ 3.09
CUX2O14529 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC34.38■■■■□ 3.09
CUX2O14529 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC34.38■■■■□ 3.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms