Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 AP000347.1-202ENST00000435868 847 ntBASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 AC008622.2-201ENST00000617006 1229 ntBASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A6A6NMZ7 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A6A6NMZ7 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
COL6A6A6NMZ7 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A6A6NMZ7 AC007663.1-201ENST00000438948 1240 ntBASIC18.1■□□□□ 0.49
COL6A6A6NMZ7 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.1■□□□□ 0.49
COL6A6A6NMZ7 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A6A6NMZ7 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.1■□□□□ 0.49
COL6A6A6NMZ7 FAM99A-202ENST00000538190 1989 ntBASIC18.1■□□□□ 0.49
COL6A6A6NMZ7 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A6A6NMZ7 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.1■□□□□ 0.49
COL6A6A6NMZ7 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A6A6NMZ7 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.1■□□□□ 0.49
COL6A6A6NMZ7 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A6A6NMZ7 AL671277.2-201ENST00000458060 996 ntBASIC18.1■□□□□ 0.49
COL6A6A6NMZ7 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.1■□□□□ 0.49
COL6A6A6NMZ7 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.1■□□□□ 0.49
COL6A6A6NMZ7 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A6A6NMZ7 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.1■□□□□ 0.49
COL6A6A6NMZ7 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.1■□□□□ 0.49
COL6A6A6NMZ7 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A6A6NMZ7 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
COL6A6A6NMZ7 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.08■□□□□ 0.49
COL6A6A6NMZ7 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL6A6A6NMZ7 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL6A6A6NMZ7 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL6A6A6NMZ7 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.08■□□□□ 0.49
COL6A6A6NMZ7 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC18.08■□□□□ 0.49
COL6A6A6NMZ7 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL6A6A6NMZ7 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.08■□□□□ 0.48
COL6A6A6NMZ7 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL6A6A6NMZ7 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
COL6A6A6NMZ7 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.08■□□□□ 0.48
COL6A6A6NMZ7 AC012313.10-201ENST00000623509 926 ntBASIC18.08■□□□□ 0.48
COL6A6A6NMZ7 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.08■□□□□ 0.48
COL6A6A6NMZ7 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.08■□□□□ 0.48
COL6A6A6NMZ7 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.08■□□□□ 0.48
COL6A6A6NMZ7 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL6A6A6NMZ7 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL6A6A6NMZ7 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
COL6A6A6NMZ7 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL6A6A6NMZ7 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL6A6A6NMZ7 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 AC083849.1-201ENST00000615227 514 ntBASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms