Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC087072.2-201ENST00000621060 682 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 AP003068.4-201ENST00000623192 802 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 C18orf12-201ENST00000623329 537 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 LINC01440-208ENST00000627300 699 ntTSL 5 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
NKX3-1Q99801 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 SLAMF1-202ENST00000302035 4006 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
NKX3-1Q99801 AC010168.2-201ENST00000562691 5428 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
NKX3-1Q99801 TCP11X2-202ENST00000453326 1747 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 TCP11X1-201ENST00000597070 1747 ntTSL 2 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 DCLRE1C-211ENST00000396817 2761 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
NKX3-1Q99801 LINC01013-201ENST00000422700 1831 ntTSL 5 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 AC023632.6-201ENST00000624338 2177 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
NKX3-1Q99801 LRRC31-202ENST00000316428 2520 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
NKX3-1Q99801 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
NKX3-1Q99801 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 KNG1-201ENST00000265023 3435 ntAPPRIS ALT1 TSL 2 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
NKX3-1Q99801 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX3-1Q99801 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
NKX3-1Q99801 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 ECI2-204ENST00000380125 1405 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
NKX3-1Q99801 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX3-1Q99801 AL358913.2-201ENST00000553881 1548 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
NKX3-1Q99801 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX3-1Q99801 DNAI1-201ENST00000242317 2504 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX3-1Q99801 CDY7P-201ENST00000429883 1604 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX3-1Q99801 OR51M1-203ENST00000642046 4092 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 CTNNA1P1-201ENST00000515849 2728 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX3-1Q99801 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 CCL13-201ENST00000225844 851 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX3-1Q99801 AKR1C4-201ENST00000263126 1192 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX3-1Q99801 RNA5SP483-201ENST00000363431 118 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 C1orf54-203ENST00000369102 1251 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 PPCS-204ENST00000372562 966 ntTSL 2 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 TRBV25-1-202ENST00000390398 381 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 RNA5SP18-201ENST00000390935 121 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 ISY1-202ENST00000393292 988 ntTSL 5 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 MIR1204-201ENST00000408388 67 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 AL355862.1-201ENST00000412705 353 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 ZEB1-AS1-202ENST00000424191 320 ntTSL 3 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 AL157402.1-201ENST00000429469 363 ntTSL 3 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 AL357552.2-201ENST00000433876 353 ntTSL 5 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 AC002066.1-202ENST00000439070 699 ntTSL 3 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 IGKV1OR10-1-201ENST00000442306 329 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 AL451074.4-201ENST00000447545 470 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 ZNF385D-AS2-202ENST00000448980 370 ntTSL 3 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 MIR4500HG-204ENST00000453832 827 ntTSL 3 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 IGKV1OR22-5-201ENST00000458718 354 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 RN7SL325P-201ENST00000460434 283 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 RN7SL213P-201ENST00000463482 317 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 AC007849.1-201ENST00000469794 513 ntTSL 4 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 AC023886.1-201ENST00000506057 685 ntTSL 3 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 HSD17B11-203ENST00000507286 851 ntTSL 5 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 AC146944.3-201ENST00000509969 371 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 AC095059.2-201ENST00000510601 933 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 AC012613.1-202ENST00000512647 424 ntTSL 3 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 AC008677.3-201ENST00000519146 666 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 AC140118.1-201ENST00000539209 532 ntTSL 4 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 DNM1P31-201ENST00000564149 696 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 AC027688.2-201ENST00000569009 511 ntTSL 3 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 AC130456.5-201ENST00000569345 510 ntTSL 5 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 AC024267.3-201ENST00000579673 562 ntTSL 5 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 AC015923.1-202ENST00000581421 491 ntTSL 2 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 MIR4642-201ENST00000583943 82 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 STARD6-204ENST00000584040 660 ntTSL 3 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 AC005537.1-202ENST00000585996 666 ntTSL 5 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 NDUFA3P1-201ENST00000588007 252 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 AC129492.5-201ENST00000603489 315 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 AC133041.1-201ENST00000608389 201 ntTSL 3 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 AL121985.2-201ENST00000621192 555 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 PFKM-232ENST00000629846 381 ntTSL 4 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 AC073342.2-201ENST00000595842 1800 ntBASIC6.26□□□□□ -1.41
NKX3-1Q99801 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX3-1Q99801 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX3-1Q99801 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX3-1Q99801 NR1H4-206ENST00000548884 2884 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX3-1Q99801 P3H2-203ENST00000427335 2963 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
NKX3-1Q99801 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC6.26□□□□□ -1.41
NKX3-1Q99801 ZNF14-201ENST00000344099 2949 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
NKX3-1Q99801 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
NKX3-1Q99801 HDAC1P1-201ENST00000455482 1445 ntBASIC6.25□□□□□ -1.41
NKX3-1Q99801 GSTM2-207ENST00000460717 1449 ntTSL 2 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
NKX3-1Q99801 AL121949.2-201ENST00000403446 1548 ntBASIC6.25□□□□□ -1.41
NKX3-1Q99801 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 OR4D1-201ENST00000268912 1024 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 WFDC8-201ENST00000289953 1069 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
NKX3-1Q99801 OR51L1-201ENST00000321543 948 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 AC135068.1-201ENST00000332663 1084 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
NKX3-1Q99801 SNORA3.1-201ENST00000408166 111 ntBASIC6.25□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms