Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 IGLV2-14-201ENST00000390312 402 ntAPPRIS P1 BASIC8.02□□□□□ -1.13
MSX1P28360 MORN2-202ENST00000409077 465 ntTSL 5 BASIC8.02□□□□□ -1.13
MSX1P28360 RNU6-757P-201ENST00000410334 100 ntBASIC8.02□□□□□ -1.13
MSX1P28360 LINC02539-201ENST00000411615 737 ntTSL 2 BASIC8.02□□□□□ -1.13
MSX1P28360 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC8.02□□□□□ -1.13
MSX1P28360 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC8.02□□□□□ -1.13
MSX1P28360 PAICSP5-201ENST00000430406 1217 ntBASIC8.02□□□□□ -1.13
MSX1P28360 AC239727.1-201ENST00000431432 623 ntTSL 3 BASIC8.02□□□□□ -1.13
MSX1P28360 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC8.02□□□□□ -1.13
MSX1P28360 AC007563.3-201ENST00000433233 371 ntBASIC8.02□□□□□ -1.13
MSX1P28360 AC025262.1-201ENST00000434563 589 ntTSL 5 BASIC8.02□□□□□ -1.13
MSX1P28360 ASS1P4-201ENST00000439462 1234 ntBASIC8.02□□□□□ -1.13
MSX1P28360 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC8.02□□□□□ -1.13
MSX1P28360 PSPC1P1-201ENST00000442352 665 ntBASIC8.02□□□□□ -1.13
MSX1P28360 AC112653.1-201ENST00000443851 386 ntBASIC8.02□□□□□ -1.13
MSX1P28360 AC244021.2-201ENST00000445260 529 ntTSL 5 BASIC8.02□□□□□ -1.13
MSX1P28360 AC104843.1-201ENST00000451203 319 ntBASIC8.02□□□□□ -1.13
MSX1P28360 RN7SL761P-201ENST00000463259 278 ntBASIC8.02□□□□□ -1.13
MSX1P28360 RN7SL554P-201ENST00000468197 292 ntBASIC8.02□□□□□ -1.13
MSX1P28360 RPSAP37-201ENST00000470913 821 ntBASIC8.02□□□□□ -1.13
MSX1P28360 CTLA4-204ENST00000472206 277 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 HMGN1P10-201ENST00000474557 553 ntBASIC8.02□□□□□ -1.13
MSX1P28360 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC8.02□□□□□ -1.13
MSX1P28360 RPS10P16-201ENST00000483812 496 ntBASIC8.02□□□□□ -1.13
MSX1P28360 HNRNPA1P20-201ENST00000484852 955 ntBASIC8.02□□□□□ -1.13
MSX1P28360 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC8.02□□□□□ -1.13
MSX1P28360 MTCO2P30-201ENST00000503662 364 ntBASIC8.02□□□□□ -1.13
MSX1P28360 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC8.02□□□□□ -1.13
MSX1P28360 AC113347.3-201ENST00000509113 148 ntBASIC8.02□□□□□ -1.13
MSX1P28360 OR7E85P-201ENST00000512164 985 ntBASIC8.02□□□□□ -1.13
MSX1P28360 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC8.02□□□□□ -1.13
MSX1P28360 GAPDHP35-201ENST00000513369 976 ntBASIC8.02□□□□□ -1.13
MSX1P28360 AC025465.4-201ENST00000513422 638 ntBASIC8.02□□□□□ -1.13
MSX1P28360 AC025766.1-201ENST00000514061 409 ntTSL 5 BASIC8.02□□□□□ -1.13
MSX1P28360 RNU6-718P-201ENST00000516166 105 ntBASIC8.02□□□□□ -1.13
MSX1P28360 LINC01944-201ENST00000517916 416 ntTSL 3 BASIC8.02□□□□□ -1.13
MSX1P28360 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC8.02□□□□□ -1.13
MSX1P28360 AC106038.2-201ENST00000520706 568 ntBASIC8.02□□□□□ -1.13
MSX1P28360 IGLVI-70-201ENST00000523272 390 ntBASIC8.02□□□□□ -1.13
MSX1P28360 HNRNPA1P38-201ENST00000523612 957 ntBASIC8.02□□□□□ -1.13
MSX1P28360 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC8.02□□□□□ -1.13
MSX1P28360 NBPF5P-202ENST00000545941 1032 ntBASIC8.02□□□□□ -1.13
MSX1P28360 OR6C7P-201ENST00000547875 934 ntBASIC8.02□□□□□ -1.13
MSX1P28360 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC8.02□□□□□ -1.13
MSX1P28360 AL591767.2-201ENST00000554984 173 ntBASIC8.02□□□□□ -1.13
MSX1P28360 RN7SL123P-201ENST00000577239 292 ntBASIC8.02□□□□□ -1.13
MSX1P28360 MIR3187-201ENST00000583431 70 ntBASIC8.02□□□□□ -1.13
MSX1P28360 PRELID3BP3-201ENST00000584963 545 ntBASIC8.02□□□□□ -1.13
MSX1P28360 EIF5AP3-201ENST00000589460 462 ntBASIC8.02□□□□□ -1.13
MSX1P28360 AC011591.1-201ENST00000591379 518 ntTSL 2 BASIC8.02□□□□□ -1.13
MSX1P28360 AC008764.3-201ENST00000597357 432 ntTSL 5 BASIC8.02□□□□□ -1.13
MSX1P28360 HMGN2P46-208ENST00000598619 490 ntBASIC8.02□□□□□ -1.13
MSX1P28360 AC097534.2-202ENST00000608794 587 ntTSL 2 BASIC8.02□□□□□ -1.13
MSX1P28360 AC116050.1-201ENST00000609777 1194 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 CT45A8-202ENST00000611660 1008 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 AC090970.3-201ENST00000612566 866 ntBASIC8.02□□□□□ -1.13
MSX1P28360 CT45A2-202ENST00000612907 1008 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 CCL4L2-212ENST00000615418 954 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 AC010133.1-201ENST00000615809 842 ntBASIC8.02□□□□□ -1.13
MSX1P28360 AC040978.1-201ENST00000617244 1282 ntBASIC8.02□□□□□ -1.13
MSX1P28360 AL136981.2-201ENST00000617319 734 ntBASIC8.02□□□□□ -1.13
MSX1P28360 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 CCL4L2-216ENST00000620098 836 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 AC012254.5-201ENST00000623573 478 ntBASIC8.02□□□□□ -1.13
MSX1P28360 CU638689.2-201ENST00000623809 818 ntBASIC8.02□□□□□ -1.13
MSX1P28360 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC8.02□□□□□ -1.13
MSX1P28360 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC8.02□□□□□ -1.13
MSX1P28360 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC8.02□□□□□ -1.13
MSX1P28360 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC8.02□□□□□ -1.13
MSX1P28360 FGD6-201ENST00000343958 9288 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 NAALAD2-210ENST00000534061 3600 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 HSP90AB1-204ENST00000620073 2644 ntAPPRIS P1 TSL 5 BASIC8.02□□□□□ -1.13
MSX1P28360 CYP27C1-201ENST00000335247 4401 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 HLTF-201ENST00000310053 5317 ntAPPRIS P3 TSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 MAPK10-232ENST00000515400 2076 ntTSL 5 BASIC8.02□□□□□ -1.13
MSX1P28360 ZNF468-201ENST00000243639 4027 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 SLAMF7-203ENST00000368043 2689 ntAPPRIS P3 TSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 TRIM49D2-201ENST00000526396 1411 ntAPPRIS P1 TSL 5 BASIC8.02□□□□□ -1.13
MSX1P28360 AC011453.1-201ENST00000597619 2239 ntBASIC8.02□□□□□ -1.13
MSX1P28360 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC8.02□□□□□ -1.13
MSX1P28360 CCDC113-202ENST00000443128 5110 ntTSL 2 BASIC8.02□□□□□ -1.13
MSX1P28360 AL512310.3-201ENST00000547023 1335 ntBASIC8.02□□□□□ -1.13
MSX1P28360 AL929601.4-201ENST00000613011 1341 ntBASIC8.02□□□□□ -1.13
MSX1P28360 GJA5-202ENST00000579774 3181 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
MSX1P28360 AC025822.2-201ENST00000455199 2287 ntTSL 2 BASIC8.01□□□□□ -1.13
MSX1P28360 NDE1-201ENST00000396354 3221 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
MSX1P28360 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
MSX1P28360 PHF7-202ENST00000347025 1472 ntTSL 5 BASIC8.01□□□□□ -1.13
MSX1P28360 AL390728.4-201ENST00000421406 1465 ntBASIC8.01□□□□□ -1.13
MSX1P28360 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
MSX1P28360 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC8.01□□□□□ -1.13
MSX1P28360 MTRR-201ENST00000264668 3274 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
MSX1P28360 ZNF185-202ENST00000318529 3878 ntAPPRIS ALT2 TSL 2 BASIC8.01□□□□□ -1.13
MSX1P28360 ENTPD1-AS1-211ENST00000454638 2933 ntTSL 2 BASIC8.01□□□□□ -1.13
MSX1P28360 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC8.01□□□□□ -1.13
MSX1P28360 SGMS1-AS1-201ENST00000443374 12400 ntTSL 4 BASIC8.01□□□□□ -1.13
MSX1P28360 FAM222B-201ENST00000341217 4033 ntTSL 5 BASIC8.01□□□□□ -1.13
MSX1P28360 AC023283.1-201ENST00000453491 4897 ntTSL 3 BASIC8.01□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms