Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AC110079.2-202ENST00000629093 698 ntTSL 3 BASIC7.56□□□□□ -1.2
APOEP02649 LINC01232-205ENST00000630421 1002 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
APOEP02649 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
APOEP02649 PIK3R3-202ENST00000372006 5019 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
APOEP02649 MT-CO1-201ENST00000361624 1542 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
APOEP02649 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC7.56□□□□□ -1.2
APOEP02649 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
APOEP02649 JAML-206ENST00000526620 1383 ntAPPRIS ALT2 TSL 2 BASIC7.56□□□□□ -1.2
APOEP02649 MAPK10-270ENST00000641102 3538 ntBASIC7.56□□□□□ -1.2
APOEP02649 SPATA31C1-201ENST00000420021 3895 ntBASIC7.55□□□□□ -1.2
APOEP02649 GPR1-AS-201ENST00000623040 3708 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
APOEP02649 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
APOEP02649 VEPH1-201ENST00000362010 4202 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
APOEP02649 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC7.55□□□□□ -1.2
APOEP02649 AC011379.1-201ENST00000508713 3025 ntBASIC7.55□□□□□ -1.2
APOEP02649 SMG1P4-203ENST00000517529 1589 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
APOEP02649 CRBN-201ENST00000231948 2206 ntAPPRIS P3 TSL 1 (best) BASIC7.55□□□□□ -1.2
APOEP02649 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
APOEP02649 PWRN1-211ENST00000568609 1443 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
APOEP02649 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC7.55□□□□□ -1.2
APOEP02649 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
APOEP02649 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC7.55□□□□□ -1.2
APOEP02649 OR5M2P-202ENST00000641241 4242 ntBASIC7.55□□□□□ -1.2
APOEP02649 CD163-209ENST00000541972 3590 ntAPPRIS ALT2 TSL 5 BASIC7.55□□□□□ -1.2
APOEP02649 TTR-201ENST00000237014 957 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
APOEP02649 OR2T10-201ENST00000330500 1049 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
APOEP02649 S100A7-202ENST00000368723 479 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
APOEP02649 RPL24P7-201ENST00000399435 453 ntBASIC7.55□□□□□ -1.2
APOEP02649 CNN3P1-201ENST00000401596 935 ntBASIC7.55□□□□□ -1.2
APOEP02649 NPM1P36-201ENST00000415681 835 ntBASIC7.55□□□□□ -1.2
APOEP02649 AL627308.2-201ENST00000420014 432 ntBASIC7.55□□□□□ -1.2
APOEP02649 AC009500.1-201ENST00000420684 583 ntBASIC7.55□□□□□ -1.2
APOEP02649 LINC01384-201ENST00000422494 659 ntTSL 3 BASIC7.55□□□□□ -1.2
APOEP02649 AL354794.2-201ENST00000424795 1248 ntBASIC7.55□□□□□ -1.2
APOEP02649 NPM1P30-201ENST00000425092 828 ntBASIC7.55□□□□□ -1.2
APOEP02649 LINC01522-201ENST00000428999 429 ntTSL 2 BASIC7.55□□□□□ -1.2
APOEP02649 AC007064.2-201ENST00000442403 500 ntTSL 5 BASIC7.55□□□□□ -1.2
APOEP02649 HGF-206ENST00000444829 1184 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
APOEP02649 AC010409.2-201ENST00000505780 478 ntBASIC7.55□□□□□ -1.2
APOEP02649 AC105202.1-203ENST00000518024 875 ntTSL 3 BASIC7.55□□□□□ -1.2
APOEP02649 AC023078.5-201ENST00000528646 707 ntTSL 3 BASIC7.55□□□□□ -1.2
APOEP02649 LALBA-202ENST00000549817 1243 ntTSL 5 BASIC7.55□□□□□ -1.2
APOEP02649 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC7.55□□□□□ -1.2
APOEP02649 AC022898.1-202ENST00000560864 806 ntTSL 2 BASIC7.55□□□□□ -1.2
APOEP02649 AC015853.3-201ENST00000570974 478 ntTSL 4 BASIC7.55□□□□□ -1.2
APOEP02649 AP005202.2-201ENST00000582386 658 ntTSL 3 BASIC7.55□□□□□ -1.2
APOEP02649 AC068254.1-201ENST00000584753 483 ntTSL 3 BASIC7.55□□□□□ -1.2
APOEP02649 AC015801.1-201ENST00000585651 153 ntBASIC7.55□□□□□ -1.2
APOEP02649 RPSAP66-201ENST00000592196 606 ntBASIC7.55□□□□□ -1.2
APOEP02649 AC011468.2-202ENST00000594362 579 ntTSL 5 BASIC7.55□□□□□ -1.2
APOEP02649 AC007204.1-201ENST00000621794 555 ntBASIC7.55□□□□□ -1.2
APOEP02649 AL132796.3-201ENST00000624703 900 ntBASIC7.55□□□□□ -1.2
APOEP02649 MMP10-201ENST00000279441 1758 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
APOEP02649 LINC01697-202ENST00000426534 1764 ntTSL 2 BASIC7.55□□□□□ -1.2
APOEP02649 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC7.55□□□□□ -1.2
APOEP02649 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
APOEP02649 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
APOEP02649 CLEC3A-201ENST00000299642 1971 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
APOEP02649 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
APOEP02649 LEKR1-201ENST00000356539 2572 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
APOEP02649 SLC16A4-202ENST00000369781 2082 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
APOEP02649 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC7.55□□□□□ -1.2
APOEP02649 LINC00310-204ENST00000430922 2086 ntTSL 2 BASIC7.55□□□□□ -1.2
APOEP02649 AC125603.4-201ENST00000621942 2699 ntBASIC7.55□□□□□ -1.2
APOEP02649 AL590542.1-201ENST00000449314 1596 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
APOEP02649 OR4C1P-202ENST00000641065 1569 ntBASIC7.54□□□□□ -1.2
APOEP02649 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC7.54□□□□□ -1.2
APOEP02649 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
APOEP02649 CD163-202ENST00000396620 3800 ntAPPRIS ALT2 TSL 2 BASIC7.54□□□□□ -1.2
APOEP02649 NRXN3-207ENST00000554719 4156 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
APOEP02649 AC009237.3-203ENST00000442128 3551 ntBASIC7.54□□□□□ -1.2
APOEP02649 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC7.54□□□□□ -1.2
APOEP02649 PSG9-206ENST00000593948 1429 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
APOEP02649 LINC02347-201ENST00000397346 2458 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
APOEP02649 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
APOEP02649 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
APOEP02649 IFNA13-202ENST00000610660 1539 ntAPPRIS P2 BASIC7.54□□□□□ -1.2
APOEP02649 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
APOEP02649 PSORS1C1-201ENST00000259881 908 ntAPPRIS P2 TSL 1 (best) BASIC7.54□□□□□ -1.2
APOEP02649 CSN2-201ENST00000353151 1066 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
APOEP02649 U3.14-201ENST00000365363 227 ntBASIC7.54□□□□□ -1.2
APOEP02649 TRBV19-201ENST00000390393 552 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
APOEP02649 TRAV12-1-201ENST00000390433 340 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
APOEP02649 TRAV22-201ENST00000390450 464 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
APOEP02649 RN7SKP30-201ENST00000411373 334 ntBASIC7.54□□□□□ -1.2
APOEP02649 AC244452.1-201ENST00000413798 141 ntBASIC7.54□□□□□ -1.2
APOEP02649 CENPN-204ENST00000428963 971 ntTSL 2 BASIC7.54□□□□□ -1.2
APOEP02649 AC019080.2-201ENST00000453859 394 ntBASIC7.54□□□□□ -1.2
APOEP02649 AL050331.2-201ENST00000457319 421 ntTSL 3 BASIC7.54□□□□□ -1.2
APOEP02649 AC026336.1-201ENST00000466577 351 ntBASIC7.54□□□□□ -1.2
APOEP02649 AC079594.1-201ENST00000489757 331 ntBASIC7.54□□□□□ -1.2
APOEP02649 AC008967.1-201ENST00000504843 163 ntBASIC7.54□□□□□ -1.2
APOEP02649 SAA3P-201ENST00000533267 365 ntBASIC7.54□□□□□ -1.2
APOEP02649 MT1B-202ENST00000562399 351 ntTSL 3 BASIC7.54□□□□□ -1.2
APOEP02649 MRPS21P9-201ENST00000571150 257 ntBASIC7.54□□□□□ -1.2
APOEP02649 AC011193.2-201ENST00000582638 367 ntBASIC7.54□□□□□ -1.2
APOEP02649 CT45A3-202ENST00000598716 855 ntAPPRIS P1 TSL 3 BASIC7.54□□□□□ -1.2
APOEP02649 AC005070.2-201ENST00000604391 260 ntBASIC7.54□□□□□ -1.2
APOEP02649 AL359094.1-211ENST00000608350 335 ntTSL 5 BASIC7.54□□□□□ -1.2
APOEP02649 AL596325.2-201ENST00000609669 505 ntTSL 3 BASIC7.54□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms