Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 TRDMT1-210ENST00000488990 1301 ntTSL 2 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 QRSL1P3-201ENST00000552666 1316 ntBASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 AC018688.1-201ENST00000636528 1754 ntBASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 LINC02535-201ENST00000455071 2513 ntTSL 2 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 MAPK10-392ENST00000642103 3126 ntAPPRIS P2 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 EPB41-201ENST00000343067 5956 ntAPPRIS P1 TSL 5 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 VNN3-201ENST00000275223 1260 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 MIR498-201ENST00000385134 124 ntBASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 KRTAP3-4P-201ENST00000430780 280 ntBASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 AL357314.1-201ENST00000433521 806 ntTSL 3 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 AC007064.2-201ENST00000442403 500 ntTSL 5 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 ARMC8P1-201ENST00000443069 1289 ntBASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 SS18L2P1-201ENST00000445923 213 ntBASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 FGF12-AS3-201ENST00000452848 291 ntTSL 3 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 AC067817.2-201ENST00000459965 387 ntTSL 3 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 TAAR3P-201ENST00000466706 1078 ntBASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 RN7SL180P-201ENST00000466769 294 ntBASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 RPL5P15-201ENST00000475870 897 ntBASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 TAAR3P-202ENST00000481759 1025 ntBASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 AP000893.2-201ENST00000527550 433 ntTSL 5 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 AC008013.2-201ENST00000537555 348 ntTSL 5 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 TRAV11-201ENST00000539512 339 ntBASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 LINC02389-202ENST00000540024 557 ntTSL 4 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 SUPT16H-204ENST00000555943 915 ntTSL 2 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 AP003071.2-201ENST00000562772 990 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 AC090774.2-201ENST00000584708 322 ntBASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 BX005040.2-201ENST00000620504 370 ntBASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 OR11G2-203ENST00000641879 4415 ntAPPRIS P1 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 ZNF770-201ENST00000356321 5439 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 CNOT4-201ENST00000315544 3783 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 THAP12P3-201ENST00000456373 2266 ntBASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 AKT3-202ENST00000336199 1688 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 APP-206ENST00000359726 3294 ntTSL 2 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 SLFN12L-201ENST00000260908 3119 ntAPPRIS P2 TSL 5 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 ZNF841-201ENST00000389534 3503 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
CHMP4CQ96CF2 CENPJ-201ENST00000381884 4347 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -1
CHMP4CQ96CF2 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC8.83□□□□□ -1
CHMP4CQ96CF2 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 KIFAP3-203ENST00000367767 2718 ntTSL 1 (best) BASIC8.83□□□□□ -1
CHMP4CQ96CF2 KRBOX1-202ENST00000418176 2566 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHMP4CQ96CF2 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 ZNF710-AS1-202ENST00000620791 2133 ntBASIC8.83□□□□□ -1
CHMP4CQ96CF2 AC022306.1-201ENST00000560489 1562 ntBASIC8.83□□□□□ -1
CHMP4CQ96CF2 WDR19-207ENST00000506503 2513 ntTSL 2 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 SERPINB8-203ENST00000397985 3477 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHMP4CQ96CF2 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC8.83□□□□□ -1
CHMP4CQ96CF2 RNA5SP231-201ENST00000410496 138 ntBASIC8.83□□□□□ -1
CHMP4CQ96CF2 AL031005.1-201ENST00000416959 723 ntTSL 3 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 AC012513.1-201ENST00000417481 784 ntTSL 2 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 RPL5P28-201ENST00000418634 693 ntBASIC8.83□□□□□ -1
CHMP4CQ96CF2 AC244505.2-201ENST00000435089 759 ntBASIC8.83□□□□□ -1
CHMP4CQ96CF2 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 LINC00578-202ENST00000442937 612 ntTSL 3 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 FAM177B-204ENST00000445590 1096 ntAPPRIS P1 TSL 5 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 IGKV1OR2-2-201ENST00000451163 355 ntBASIC8.83□□□□□ -1
CHMP4CQ96CF2 LINC01053-201ENST00000457628 771 ntTSL 2 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 QTRT2-212ENST00000485050 3844 ntTSL 1 (best) BASIC8.83□□□□□ -1
CHMP4CQ96CF2 AC006487.2-201ENST00000503624 577 ntTSL 4 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 AC116049.2-201ENST00000508572 754 ntTSL 4 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 AC095059.2-201ENST00000510601 933 ntBASIC8.83□□□□□ -1
CHMP4CQ96CF2 AC012613.1-202ENST00000512647 424 ntTSL 3 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 AC083843.1-201ENST00000521444 849 ntTSL 4 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 AC018523.1-201ENST00000534211 512 ntBASIC8.83□□□□□ -1
CHMP4CQ96CF2 KNTC1-206ENST00000534995 1065 ntTSL 2 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 AC068631.3-201ENST00000538831 225 ntBASIC8.83□□□□□ -1
CHMP4CQ96CF2 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 CR382285.1-202ENST00000604687 547 ntBASIC8.83□□□□□ -1
CHMP4CQ96CF2 AL136985.2-201ENST00000607372 535 ntBASIC8.83□□□□□ -1
CHMP4CQ96CF2 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 CENPN-205ENST00000439957 1699 ntTSL 2 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 FBXL13-201ENST00000313221 2744 ntTSL 2 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 ZNF90-201ENST00000418063 2310 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHMP4CQ96CF2 ZFP42-203ENST00000618147 2338 ntAPPRIS P1 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 ST7-206ENST00000393447 2182 ntTSL 1 (best) BASIC8.83□□□□□ -1
CHMP4CQ96CF2 IL31RA-207ENST00000490985 2414 ntTSL 1 (best) BASIC8.83□□□□□ -1
CHMP4CQ96CF2 PNN-201ENST00000216832 3576 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHMP4CQ96CF2 AC093829.1-201ENST00000506662 1618 ntBASIC8.83□□□□□ -1
CHMP4CQ96CF2 ARHGAP42P4-201ENST00000549782 2934 ntBASIC8.83□□□□□ -1
CHMP4CQ96CF2 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC8.83□□□□□ -1
CHMP4CQ96CF2 MAPK10-270ENST00000641102 3538 ntBASIC8.83□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms