Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC8.91□□□□□ -0.98
CHMP4CQ96CF2 TMEM138-209ENST00000542946 2839 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 CCL16-205ENST00000611905 1506 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 OR4F15-201ENST00000332238 2119 ntAPPRIS P1 BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 AC241584.2-201ENST00000637142 2090 ntBASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 AC067968.1-201ENST00000591793 3766 ntAPPRIS P1 TSL 2 BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 ARPP21-221ENST00000444190 3182 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 KYNUP1-201ENST00000466683 1406 ntBASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 ZNF10-202ENST00000402932 1967 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 RSRC1-203ENST00000464171 2411 ntTSL 5 BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 OAT-208ENST00000539214 1864 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 AC021231.1-201ENST00000559246 1342 ntTSL 5 BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 RGPD1-201ENST00000398193 5425 ntAPPRIS ALT2 TSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 PDXDC1-201ENST00000325823 1113 ntTSL 5 BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 ISY1-202ENST00000393292 988 ntTSL 5 BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 TMEM126B-202ENST00000393375 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 NHP2P2-201ENST00000396362 460 ntBASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 RPL7-203ENST00000396466 762 ntTSL 3 BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 U3.31-201ENST00000408113 216 ntBASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 REG3G-203ENST00000409471 575 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 AC093642.1-201ENST00000412193 565 ntTSL 3 BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 RPL12P10-201ENST00000413498 498 ntBASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 OR4A8-201ENST00000418689 945 ntAPPRIS P1 BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 LINC01715-201ENST00000420776 624 ntTSL 2 BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 CLIC4P3-201ENST00000422221 752 ntBASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 AC105393.2-201ENST00000431911 549 ntTSL 4 BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 TULP3P1-201ENST00000442322 816 ntTSL 3 BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 AL929410.2-201ENST00000451170 189 ntBASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 TDGF1P6-201ENST00000463873 448 ntBASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 C1orf112-208ENST00000496973 782 ntAPPRIS ALT2 TSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 RPL22-208ENST00000497965 786 ntTSL 2 BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 OR7E83P-201ENST00000511021 970 ntBASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 LACTB2-AS1-204ENST00000519167 793 ntTSL 3 BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 AC126755.2-209ENST00000531453 699 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 AC138969.1-212ENST00000541593 699 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 NPIPA5-203ENST00000543801 699 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 APEX1-214ENST00000557054 888 ntTSL 5 BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 ULK4P2-202ENST00000564187 492 ntBASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 ZNF528-AS1-204ENST00000601562 1069 ntTSL 5 BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 AC129908.1-201ENST00000624553 648 ntBASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 ZIM3-201ENST00000269834 2627 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
CHMP4CQ96CF2 HKR1-223ENST00000591471 3472 ntTSL 2 BASIC8.9□□□□□ -0.99
CHMP4CQ96CF2 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC8.9□□□□□ -0.99
CHMP4CQ96CF2 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
CHMP4CQ96CF2 NPL-212ENST00000614468 2376 ntTSL 5 BASIC8.9□□□□□ -0.99
CHMP4CQ96CF2 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 HSPA8P11-201ENST00000508840 1898 ntBASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 AC015871.4-201ENST00000624650 2260 ntBASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 TBCCD1-203ENST00000424280 3058 ntAPPRIS P1 TSL 5 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 CDKL5-202ENST00000379996 3449 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 PBLD-204ENST00000358769 2587 ntAPPRIS P1 TSL 5 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 AL589993.1-201ENST00000407450 2524 ntBASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 AMPD1-203ENST00000520113 2375 ntAPPRIS P3 TSL 1 (best) BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 RNU6-167P-201ENST00000384292 106 ntBASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 LARP1P1-201ENST00000407692 292 ntBASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 AL356309.1-201ENST00000425153 339 ntTSL 3 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 AL773545.1-201ENST00000425632 347 ntTSL 5 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 VDAC2P3-201ENST00000430995 828 ntBASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 AL162231.2-201ENST00000434627 665 ntTSL 2 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 AC005550.2-201ENST00000476382 318 ntBASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 RN7SL153P-201ENST00000486501 292 ntBASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 AC021151.1-201ENST00000506933 183 ntTSL 3 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 SNX18P27-201ENST00000523611 779 ntBASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 AP001922.2-201ENST00000530435 390 ntTSL 3 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 FRG2IP-201ENST00000563581 781 ntBASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 LINC02180-201ENST00000566439 1010 ntTSL 3 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 AC099518.1-201ENST00000568032 841 ntTSL 3 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 RN7SL14P-201ENST00000579715 298 ntBASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 AC010761.6-201ENST00000587898 197 ntTSL 3 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 AL390058.1-201ENST00000603834 629 ntBASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 GMDS-AS1-215ENST00000606884 580 ntTSL 2 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 AC079414.3-201ENST00000612986 1090 ntBASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 GOSR2-222ENST00000639031 885 ntTSL 3 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 AC116631.1-202ENST00000640984 683 ntBASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 DUBR-202ENST00000466734 2737 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 CNTN4-AS1-201ENST00000442749 1640 ntTSL 3 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 NEXN-202ENST00000334785 2607 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 C8orf34-208ENST00000523686 1948 ntAPPRIS ALT2 TSL 2 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 MFSD6-201ENST00000281416 4608 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 CXCR2P1-201ENST00000439871 2503 ntTSL 3 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 PDZK1P1-201ENST00000401008 3498 ntTSL 2 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC8.89□□□□□ -0.99
CHMP4CQ96CF2 IFT88-201ENST00000319980 3091 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms