Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC16■□□□□ 0.15
LSM4Q9Y4Z0 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
LSM4Q9Y4Z0 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
LSM4Q9Y4Z0 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC16■□□□□ 0.15
LSM4Q9Y4Z0 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LSM4Q9Y4Z0 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
LSM4Q9Y4Z0 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 AP001160.3-201ENST00000601484 763 ntBASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 MYCNOS-205ENST00000641950 531 ntBASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC15.98■□□□□ 0.15
LSM4Q9Y4Z0 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 AC098818.2-201ENST00000564925 2320 ntBASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 KRT16P2-201ENST00000414673 1423 ntBASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 SLC29A4P1-201ENST00000398760 971 ntBASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 RGMA-211ENST00000557420 989 ntTSL 3 BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 KLF13-207ENST00000560473 489 ntTSL 3 BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 AL138781.1-201ENST00000566567 1274 ntBASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 H19-201ENST00000411754 1788 ntTSL 5 BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC15.97■□□□□ 0.15
LSM4Q9Y4Z0 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.15
LSM4Q9Y4Z0 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC15.96■□□□□ 0.15
LSM4Q9Y4Z0 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
LSM4Q9Y4Z0 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.15
LSM4Q9Y4Z0 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC15.96■□□□□ 0.15
LSM4Q9Y4Z0 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
LSM4Q9Y4Z0 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LSM4Q9Y4Z0 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
LSM4Q9Y4Z0 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LSM4Q9Y4Z0 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LSM4Q9Y4Z0 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LSM4Q9Y4Z0 AC245052.3-201ENST00000450182 901 ntBASIC15.96■□□□□ 0.15
LSM4Q9Y4Z0 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
LSM4Q9Y4Z0 PFKL-212ENST00000628044 129 ntTSL 3 BASIC15.96■□□□□ 0.15
LSM4Q9Y4Z0 AC066615.1-201ENST00000640911 628 ntBASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms