Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
CCDC28BQ9BUN5 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC28BQ9BUN5 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC28BQ9BUN5 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC28BQ9BUN5 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CCDC28BQ9BUN5 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC28BQ9BUN5 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC28BQ9BUN5 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC28BQ9BUN5 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC28BQ9BUN5 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC28BQ9BUN5 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC28BQ9BUN5 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC28BQ9BUN5 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC28BQ9BUN5 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC28BQ9BUN5 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC28BQ9BUN5 Z82202.1-201ENST00000623446 1880 ntBASIC19.45■□□□□ 0.7
CCDC28BQ9BUN5 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC28BQ9BUN5 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 IRS3P-201ENST00000223076 1006 ntBASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC28BQ9BUN5 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 AL136967.2-201ENST00000623968 743 ntBASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
CCDC28BQ9BUN5 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CCDC28BQ9BUN5 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC28BQ9BUN5 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC28BQ9BUN5 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC28BQ9BUN5 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC28BQ9BUN5 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC28BQ9BUN5 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC28BQ9BUN5 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC28BQ9BUN5 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC28BQ9BUN5 CCDC92B-201ENST00000575506 885 ntBASIC19.42■□□□□ 0.7
CCDC28BQ9BUN5 NEFHP1-201ENST00000412845 2629 ntBASIC19.42■□□□□ 0.7
CCDC28BQ9BUN5 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC28BQ9BUN5 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CCDC28BQ9BUN5 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC28BQ9BUN5 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC28BQ9BUN5 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC28BQ9BUN5 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.41■□□□□ 0.7
CCDC28BQ9BUN5 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms