Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 KRT18P11-201ENST00000435214 1283 ntBASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 AC004854.2-201ENST00000608450 1441 ntBASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
DEPDC4Q8N2C3 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
DEPDC4Q8N2C3 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
DEPDC4Q8N2C3 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.55■□□□□ 0.56
DEPDC4Q8N2C3 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
DEPDC4Q8N2C3 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
DEPDC4Q8N2C3 KRT87P-202ENST00000534226 1464 ntBASIC18.55■□□□□ 0.56
DEPDC4Q8N2C3 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
DEPDC4Q8N2C3 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.55■□□□□ 0.56
DEPDC4Q8N2C3 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.55■□□□□ 0.56
DEPDC4Q8N2C3 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
DEPDC4Q8N2C3 RARRES2P11-201ENST00000635158 484 ntBASIC18.55■□□□□ 0.56
DEPDC4Q8N2C3 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
DEPDC4Q8N2C3 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
DEPDC4Q8N2C3 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
DEPDC4Q8N2C3 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
DEPDC4Q8N2C3 AC125437.2-201ENST00000625180 2167 ntBASIC18.55■□□□□ 0.56
DEPDC4Q8N2C3 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
DEPDC4Q8N2C3 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.55■□□□□ 0.56
DEPDC4Q8N2C3 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
DEPDC4Q8N2C3 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 AL158211.5-201ENST00000623583 2518 ntBASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
DEPDC4Q8N2C3 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.53■□□□□ 0.56
DEPDC4Q8N2C3 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
DEPDC4Q8N2C3 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.52■□□□□ 0.56
DEPDC4Q8N2C3 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
DEPDC4Q8N2C3 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.52■□□□□ 0.56
DEPDC4Q8N2C3 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
DEPDC4Q8N2C3 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
DEPDC4Q8N2C3 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms