Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.69■□□□□ 0.42
SKA3Q8IX90 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SKA3Q8IX90 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SKA3Q8IX90 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC17.69■□□□□ 0.42
SKA3Q8IX90 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
SKA3Q8IX90 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SKA3Q8IX90 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SKA3Q8IX90 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC17.69■□□□□ 0.42
SKA3Q8IX90 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.69■□□□□ 0.42
SKA3Q8IX90 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC17.69■□□□□ 0.42
SKA3Q8IX90 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.69■□□□□ 0.42
SKA3Q8IX90 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.69■□□□□ 0.42
SKA3Q8IX90 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SKA3Q8IX90 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SKA3Q8IX90 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC17.69■□□□□ 0.42
SKA3Q8IX90 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SKA3Q8IX90 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.69■□□□□ 0.42
SKA3Q8IX90 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SKA3Q8IX90 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SKA3Q8IX90 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SKA3Q8IX90 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC17.68■□□□□ 0.42
SKA3Q8IX90 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SKA3Q8IX90 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
SKA3Q8IX90 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SKA3Q8IX90 DUSP5P2-201ENST00000426873 1033 ntBASIC17.68■□□□□ 0.42
SKA3Q8IX90 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC17.68■□□□□ 0.42
SKA3Q8IX90 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
SKA3Q8IX90 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.68■□□□□ 0.42
SKA3Q8IX90 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SKA3Q8IX90 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SKA3Q8IX90 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.68■□□□□ 0.42
SKA3Q8IX90 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC17.68■□□□□ 0.42
SKA3Q8IX90 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SKA3Q8IX90 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SKA3Q8IX90 H19-201ENST00000411754 1788 ntTSL 5 BASIC17.68■□□□□ 0.42
SKA3Q8IX90 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SKA3Q8IX90 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SKA3Q8IX90 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SKA3Q8IX90 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SKA3Q8IX90 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
SKA3Q8IX90 AL162377.1-201ENST00000618844 1793 ntBASIC17.67■□□□□ 0.42
SKA3Q8IX90 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SKA3Q8IX90 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.67■□□□□ 0.42
SKA3Q8IX90 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.67■□□□□ 0.42
SKA3Q8IX90 AC091874.3-201ENST00000512672 1195 ntBASIC17.67■□□□□ 0.42
SKA3Q8IX90 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.67■□□□□ 0.42
SKA3Q8IX90 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC17.67■□□□□ 0.42
SKA3Q8IX90 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC17.67■□□□□ 0.42
SKA3Q8IX90 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SKA3Q8IX90 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SKA3Q8IX90 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC17.67■□□□□ 0.42
SKA3Q8IX90 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SKA3Q8IX90 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.67■□□□□ 0.42
SKA3Q8IX90 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
SKA3Q8IX90 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SKA3Q8IX90 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SKA3Q8IX90 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SKA3Q8IX90 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SKA3Q8IX90 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SKA3Q8IX90 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
SKA3Q8IX90 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SKA3Q8IX90 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SKA3Q8IX90 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SKA3Q8IX90 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
SKA3Q8IX90 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
SKA3Q8IX90 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC17.66■□□□□ 0.42
SKA3Q8IX90 AL355802.2-201ENST00000402069 882 ntBASIC17.66■□□□□ 0.42
SKA3Q8IX90 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
SKA3Q8IX90 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SKA3Q8IX90 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
SKA3Q8IX90 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SKA3Q8IX90 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SKA3Q8IX90 BET1L-207ENST00000529614 560 ntTSL 5 BASIC17.66■□□□□ 0.42
SKA3Q8IX90 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SKA3Q8IX90 AC098934.4-201ENST00000564127 592 ntBASIC17.66■□□□□ 0.42
SKA3Q8IX90 AC142086.2-201ENST00000569753 217 ntBASIC17.66■□□□□ 0.42
SKA3Q8IX90 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.66■□□□□ 0.42
SKA3Q8IX90 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
SKA3Q8IX90 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
SKA3Q8IX90 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
SKA3Q8IX90 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.66■□□□□ 0.42
SKA3Q8IX90 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC17.66■□□□□ 0.42
SKA3Q8IX90 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
SKA3Q8IX90 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SKA3Q8IX90 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
SKA3Q8IX90 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
SKA3Q8IX90 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC17.65■□□□□ 0.42
SKA3Q8IX90 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
SKA3Q8IX90 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
SKA3Q8IX90 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SKA3Q8IX90 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
SKA3Q8IX90 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SKA3Q8IX90 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SKA3Q8IX90 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SKA3Q8IX90 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SKA3Q8IX90 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SKA3Q8IX90 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.65■□□□□ 0.42
SKA3Q8IX90 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC17.65■□□□□ 0.42
SKA3Q8IX90 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC17.65■□□□□ 0.42
SKA3Q8IX90 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms