Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CTR9Q6PD62 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
CTR9Q6PD62 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC23.8■■□□□ 1.4
CTR9Q6PD62 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC23.8■■□□□ 1.4
CTR9Q6PD62 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CTR9Q6PD62 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CTR9Q6PD62 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CTR9Q6PD62 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
CTR9Q6PD62 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC23.79■■□□□ 1.4
CTR9Q6PD62 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CTR9Q6PD62 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CTR9Q6PD62 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CTR9Q6PD62 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CTR9Q6PD62 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
CTR9Q6PD62 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CTR9Q6PD62 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC23.79■■□□□ 1.4
CTR9Q6PD62 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC23.79■■□□□ 1.4
CTR9Q6PD62 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC23.79■■□□□ 1.4
CTR9Q6PD62 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CTR9Q6PD62 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC23.78■■□□□ 1.4
CTR9Q6PD62 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC23.78■■□□□ 1.4
CTR9Q6PD62 SMG8-203ENST00000578922 2178 ntBASIC23.78■■□□□ 1.4
CTR9Q6PD62 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CTR9Q6PD62 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CTR9Q6PD62 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CTR9Q6PD62 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CTR9Q6PD62 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC23.78■■□□□ 1.4
CTR9Q6PD62 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CTR9Q6PD62 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
CTR9Q6PD62 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC23.78■■□□□ 1.4
CTR9Q6PD62 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CTR9Q6PD62 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC23.78■■□□□ 1.4
CTR9Q6PD62 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC23.78■■□□□ 1.4
CTR9Q6PD62 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CTR9Q6PD62 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
CTR9Q6PD62 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
CTR9Q6PD62 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
CTR9Q6PD62 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CTR9Q6PD62 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
CTR9Q6PD62 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC23.78■■□□□ 1.4
CTR9Q6PD62 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
CTR9Q6PD62 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CTR9Q6PD62 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC23.77■■□□□ 1.4
CTR9Q6PD62 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CTR9Q6PD62 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CTR9Q6PD62 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
CTR9Q6PD62 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
CTR9Q6PD62 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CTR9Q6PD62 SERF2-207ENST00000409614 582 ntTSL 2 BASIC23.77■■□□□ 1.4
CTR9Q6PD62 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC23.77■■□□□ 1.4
CTR9Q6PD62 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC23.77■■□□□ 1.4
CTR9Q6PD62 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
CTR9Q6PD62 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC23.77■■□□□ 1.4
CTR9Q6PD62 AL023875.1-201ENST00000640777 796 ntBASIC23.77■■□□□ 1.4
CTR9Q6PD62 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC23.77■■□□□ 1.4
CTR9Q6PD62 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CTR9Q6PD62 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CTR9Q6PD62 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CTR9Q6PD62 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
CTR9Q6PD62 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC23.76■■□□□ 1.39
CTR9Q6PD62 AC073314.1-201ENST00000568729 2216 ntBASIC23.76■■□□□ 1.39
CTR9Q6PD62 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CTR9Q6PD62 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
CTR9Q6PD62 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CTR9Q6PD62 ISG20-202ENST00000379224 540 ntTSL 3 BASIC23.76■■□□□ 1.39
CTR9Q6PD62 LY6E-205ENST00000519611 635 ntTSL 3 BASIC23.76■■□□□ 1.39
CTR9Q6PD62 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC23.76■■□□□ 1.39
CTR9Q6PD62 RHOD-202ENST00000532559 538 ntTSL 3 BASIC23.76■■□□□ 1.39
CTR9Q6PD62 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC23.76■■□□□ 1.39
CTR9Q6PD62 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC23.76■■□□□ 1.39
CTR9Q6PD62 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
CTR9Q6PD62 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CTR9Q6PD62 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CTR9Q6PD62 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CTR9Q6PD62 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC23.76■■□□□ 1.39
CTR9Q6PD62 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CTR9Q6PD62 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CTR9Q6PD62 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CTR9Q6PD62 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CTR9Q6PD62 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
CTR9Q6PD62 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC23.75■■□□□ 1.39
CTR9Q6PD62 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CTR9Q6PD62 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CTR9Q6PD62 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CTR9Q6PD62 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CTR9Q6PD62 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC23.75■■□□□ 1.39
CTR9Q6PD62 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC23.75■■□□□ 1.39
CTR9Q6PD62 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
CTR9Q6PD62 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC23.75■■□□□ 1.39
CTR9Q6PD62 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CTR9Q6PD62 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC23.75■■□□□ 1.39
CTR9Q6PD62 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
CTR9Q6PD62 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CTR9Q6PD62 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CTR9Q6PD62 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
CTR9Q6PD62 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC23.75■■□□□ 1.39
CTR9Q6PD62 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CTR9Q6PD62 AC020907.5-201ENST00000624372 1936 ntBASIC23.74■■□□□ 1.39
CTR9Q6PD62 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CTR9Q6PD62 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms