Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
CCDC40Q4G0X9 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
CCDC40Q4G0X9 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
CCDC40Q4G0X9 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 KRT18P68-201ENST00000392293 1000 ntBASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 AC105020.6-201ENST00000621523 1217 ntBASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 AC007952.6-201ENST00000573168 2673 ntBASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 AC003957.1-201ENST00000625108 2673 ntBASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC40Q4G0X9 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC22■■□□□ 1.11
CCDC40Q4G0X9 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC22■■□□□ 1.11
CCDC40Q4G0X9 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC40Q4G0X9 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC22■■□□□ 1.11
CCDC40Q4G0X9 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC40Q4G0X9 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC22■■□□□ 1.11
CCDC40Q4G0X9 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC40Q4G0X9 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC22■■□□□ 1.11
CCDC40Q4G0X9 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC40Q4G0X9 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC40Q4G0X9 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC22■■□□□ 1.11
CCDC40Q4G0X9 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC22■■□□□ 1.11
CCDC40Q4G0X9 METTL26-203ENST00000397664 604 ntTSL 2 BASIC22■■□□□ 1.11
CCDC40Q4G0X9 AC004911.1-201ENST00000416316 871 ntBASIC22■■□□□ 1.11
CCDC40Q4G0X9 AL355472.2-201ENST00000422958 438 ntBASIC22■■□□□ 1.11
CCDC40Q4G0X9 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC22■■□□□ 1.11
CCDC40Q4G0X9 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC22■■□□□ 1.11
CCDC40Q4G0X9 CYP2T3P-201ENST00000601990 817 ntBASIC22■■□□□ 1.11
CCDC40Q4G0X9 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC22■■□□□ 1.11
CCDC40Q4G0X9 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC22■■□□□ 1.11
CCDC40Q4G0X9 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC22■■□□□ 1.11
CCDC40Q4G0X9 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC22■■□□□ 1.11
CCDC40Q4G0X9 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC40Q4G0X9 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC40Q4G0X9 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC22■■□□□ 1.11
CCDC40Q4G0X9 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC22■■□□□ 1.11
CCDC40Q4G0X9 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC22■■□□□ 1.11
CCDC40Q4G0X9 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.99■■□□□ 1.11
CCDC40Q4G0X9 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC40Q4G0X9 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC40Q4G0X9 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21.99■■□□□ 1.11
CCDC40Q4G0X9 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC40Q4G0X9 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC40Q4G0X9 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC40Q4G0X9 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
CCDC40Q4G0X9 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.99■■□□□ 1.11
CCDC40Q4G0X9 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC40Q4G0X9 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC40Q4G0X9 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC40Q4G0X9 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC40Q4G0X9 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC40Q4G0X9 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC40Q4G0X9 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.99■■□□□ 1.11
CCDC40Q4G0X9 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC40Q4G0X9 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
CCDC40Q4G0X9 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC40Q4G0X9 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.98■■□□□ 1.11
CCDC40Q4G0X9 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
CCDC40Q4G0X9 MIR935-201ENST00000401179 91 ntBASIC21.98■■□□□ 1.11
CCDC40Q4G0X9 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC40Q4G0X9 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.98■■□□□ 1.11
CCDC40Q4G0X9 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.98■■□□□ 1.11
CCDC40Q4G0X9 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC40Q4G0X9 IKBKGP1-201ENST00000612193 1073 ntBASIC21.98■■□□□ 1.11
CCDC40Q4G0X9 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC40Q4G0X9 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC40Q4G0X9 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC40Q4G0X9 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.98■■□□□ 1.11
CCDC40Q4G0X9 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 AL691432.2-201ENST00000607222 2038 ntBASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 AC005181.1-201ENST00000604782 1256 ntBASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 OR10C1-204ENST00000622521 1039 ntBASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 AC092437.1-201ENST00000624794 1048 ntBASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms